Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JNX02_RS03870 Genome accession   NZ_CP068998
Coordinates   798434..798958 (-) Length   174 a.a.
NCBI ID   WP_203199071.1    Uniprot ID   -
Organism   Sulfitobacter mediterraneus strain SC7-37     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 793434..803958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNX02_RS03855 (JNX02_03855) - 793629..794225 (+) 597 WP_203199068.1 shikimate kinase -
  JNX02_RS03860 (JNX02_03860) aroB 794218..795333 (+) 1116 WP_203199069.1 3-dehydroquinate synthase -
  JNX02_RS03865 (JNX02_03865) - 795344..798310 (-) 2967 WP_203199070.1 methyl-accepting chemotaxis protein -
  JNX02_RS03870 (JNX02_03870) ssb 798434..798958 (-) 525 WP_203199071.1 single-stranded DNA-binding protein Machinery gene
  JNX02_RS03875 (JNX02_03875) - 799224..799772 (+) 549 WP_203199798.1 lytic transglycosylase domain-containing protein -
  JNX02_RS03880 (JNX02_03880) - 799943..800467 (+) 525 WP_037907402.1 hypothetical protein -
  JNX02_RS03885 (JNX02_03885) - 800520..802610 (-) 2091 WP_037907400.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18064.56 Da        Isoelectric Point: 5.0012

>NTDB_id=531958 JNX02_RS03870 WP_203199071.1 798434..798958(-) (ssb) [Sulfitobacter mediterraneus strain SC7-37]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFQEGLVRIAEQYLRKGSKVYI
EGQLQTRKWQDQSGNDRYSTEVVLQGFGGTLTMLDGRDGGSGGGGGGYGGGSGGGDYGSGGYDSGNGGGGGGYDSGPSGG
GGGGSRDLDDEIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=531958 JNX02_RS03870 WP_203199071.1 798434..798958(-) (ssb) [Sulfitobacter mediterraneus strain SC7-37]
ATGGCCGGTTCAGTTAACAAAGTGATCCTTATCGGCAATCTGGGGCGCGATCCCGAGGTGCGGTCGTTTCAGAATGGCGG
CAAGGTTTGTAATCTGCGCATCGCCACCTCTGAAACCTGGAAAGACCGCAACACCGGCGAACGCCGTGAGAAAACCGAAT
GGCATTCGGTGGCGATCTTTCAAGAAGGACTGGTGCGCATCGCCGAGCAGTATCTGCGCAAGGGGTCAAAAGTTTACATC
GAAGGCCAGTTGCAGACGCGCAAATGGCAGGATCAATCCGGCAATGACCGCTACAGCACCGAAGTTGTCTTGCAAGGGTT
TGGCGGCACTTTGACCATGCTGGATGGCCGCGACGGCGGCTCCGGTGGTGGTGGCGGCGGTTATGGCGGCGGCTCCGGTG
GCGGCGATTACGGCAGCGGCGGATACGACAGCGGCAATGGCGGCGGCGGGGGCGGTTATGACAGCGGCCCATCCGGCGGC
GGCGGTGGAGGTTCCCGCGATCTGGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.143

100

0.534
  ssb Glaesserella parasuis strain SC1401

46.237

100

0.494
  ssb Neisseria meningitidis MC58

41.989

100

0.437
  ssb Neisseria gonorrhoeae MS11

41.989

100

0.437