Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JN403_RS07360 Genome accession   NZ_CP068986
Coordinates   1632078..1632608 (+) Length   176 a.a.
NCBI ID   WP_172609872.1    Uniprot ID   -
Organism   Pseudomonas sp. 15A4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1627078..1637608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN403_RS07345 (JN403_07345) bfr 1627113..1627577 (+) 465 WP_122623962.1 bacterioferritin -
  JN403_RS07350 (JN403_07350) uvrA 1627650..1630484 (-) 2835 WP_205486533.1 excinuclease ABC subunit UvrA -
  JN403_RS07355 (JN403_07355) - 1630674..1632068 (+) 1395 WP_205486536.1 MFS transporter -
  JN403_RS07360 (JN403_07360) ssb 1632078..1632608 (+) 531 WP_172609872.1 single-stranded DNA-binding protein Machinery gene
  JN403_RS07365 (JN403_07365) - 1632700..1633179 (-) 480 WP_205486538.1 nuclear transport factor 2 family protein -
  JN403_RS07370 (JN403_07370) - 1633228..1633806 (-) 579 WP_205487250.1 TetR family transcriptional regulator -
  JN403_RS07375 (JN403_07375) - 1633864..1636218 (-) 2355 WP_205486546.1 FdhF/YdeP family oxidoreductase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19429.61 Da        Isoelectric Point: 5.9455

>NTDB_id=531800 JN403_RS07360 WP_172609872.1 1632078..1632608(+) (ssb) [Pseudomonas sp. 15A4]
MARGVNKVILVGTCGQDPEVRYMPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDGAPQGQGGGGYQNSAPRPQQQARPQQSAPQPQRESRPAPQQA
PQPAPDFDSFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=531800 JN403_RS07360 WP_172609872.1 1632078..1632608(+) (ssb) [Pseudomonas sp. 15A4]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACATGCGGCCAGGATCCCGAAGTCCGCTACATGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCAACGAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTCGCCGAGATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAGAAAGACGGCATCAAGCGTTACACGACCGAAATCGTCGTCGACATGCAAGGCAC
CATGCAGTTGCTGGGTGGCCGTCCTCAAGGCGACGGTGCTCCTCAGGGTCAGGGTGGTGGCGGTTATCAGAACTCCGCGC
CGCGTCCGCAGCAGCAGGCCCGTCCGCAGCAGTCCGCTCCTCAGCCACAGCGTGAATCACGTCCTGCGCCTCAACAAGCG
CCGCAGCCAGCGCCTGATTTCGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.889

100

0.602
  ssb Neisseria meningitidis MC58

51.136

100

0.511
  ssb Neisseria gonorrhoeae MS11

51.136

100

0.511
  ssb Glaesserella parasuis strain SC1401

49.171

100

0.506