Detailed information NTG0531793

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: JN403_RS00860
• Genome accession: NZ_CP068986
• Coordinates: 192108..193448 (+)
• Length: 446 a.a.
• NCBI ID: WP_205484826.1
• Uniprot ID: -
• Organism: Pseudomonas sp. 15A4
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 187108..198448

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JN403_RS00835 (JN403_00835)	pgeF	187259..187987 (-)	729	WP_205484824.1	peptidoglycan editing factor PgeF	-
JN403_RS00840 (JN403_00840)	rluD	187996..188958 (-)	963	WP_074890541.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
JN403_RS00845 (JN403_00845)	-	189109..190131 (+)	1023	WP_122535375.1	outer membrane protein assembly factor BamD	-
JN403_RS00850 (JN403_00850)	-	190284..190523 (+)	240	WP_122622740.1	PP0621 family protein	-
JN403_RS00855 (JN403_00855)	pilS	190513..192105 (+)	1593	WP_205484825.1	ATP-binding protein	Regulator
JN403_RS00860 (JN403_00860)	pilR	192108..193448 (+)	1341	WP_205484826.1	sigma-54 dependent transcriptional regulator	Regulator
JN403_RS00865 (JN403_00865)	thiO	193528..194631 (-)	1104	WP_205487198.1	glycine oxidase ThiO	-
JN403_RS00870 (JN403_00870)	-	194662..195054 (-)	393	WP_205484827.1	type IV pilin protein	-
JN403_RS00875 (JN403_00875)	-	195064..198158 (-)	3095	Protein_163	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 50269.51 Da
• Isoelectric Point: 6.5141

>NTDB_id=531793 JN403_RS00860 WP_205484826.1 192108..193448(+) (pilR) [Pseudomonas sp. 15A4]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVKEAQEWLAREAFDLCLTDMRLPDGNGLELVQHIQKRHNQVPVA
MITAHGSLDTAIHALKAGAFDFLTKPVDLTRLRELVSSALRLRTAPAEDNRIDHRLLGSSPPMQALRKQIAKLARSQAPI
YISGESGSGKELVARLIHEQGPRAEQSFVPVNCGAIPSELMESEFFGHRKGSFTGAHEDKPGLFQVANGGTLFLDEVADL
PLAMQVKLLRAIQEKSVRAIGGQQEQVVDVRVLCATHKDLNQEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEEIANS
VLRRLAESAGEPATLLPPHALAALKGYRFPGNVRELENMLERAYTLCEDDQINIEDLRLAEPSRPTEQDGPSLANIDNLE
DYLESIERKLILQALEETRWNRTAAAQRLNLTFRSMRYRLKKLGLE

Nucleotide

• Length: 1341 bp

>NTDB_id=531793 JN403_RS00860 WP_205484826.1 192108..193448(+) (pilR) [Pseudomonas sp. 15A4]
ATGAGCCAACGGCAAAAGATCCTGATCGTCGACGATGAACCGGACATTCGTGAGTTGCTGGAAATCACGCTCGGACGGAT
GAAGCTGGATACTCGCAGCGCGCGCAACGTCAAGGAAGCCCAAGAGTGGCTGGCGCGCGAGGCATTCGACCTGTGCCTGA
CCGACATGCGTCTGCCGGATGGCAATGGCCTGGAGTTGGTGCAGCACATTCAGAAGCGTCACAATCAGGTACCGGTGGCG
ATGATCACCGCCCACGGCAGCCTCGACACGGCGATCCATGCACTGAAAGCCGGCGCGTTCGACTTCTTGACCAAGCCGGT
TGATCTGACGCGTTTGCGTGAGTTGGTGTCCAGCGCCCTGCGCCTGCGCACCGCCCCTGCCGAAGACAACCGCATCGACC
ATCGCTTGCTGGGCAGCTCTCCACCGATGCAGGCACTGCGTAAACAAATCGCCAAACTGGCGCGTAGCCAGGCGCCGATC
TATATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTGGTCGCACGGTTGATTCACGAGCAAGGCCCGCGCGCCGAGCAGTC
GTTCGTACCCGTCAACTGCGGTGCGATCCCGTCGGAACTGATGGAAAGCGAATTCTTCGGGCACCGCAAAGGCAGTTTCA
CTGGCGCCCATGAAGACAAACCCGGGCTGTTTCAGGTGGCCAATGGCGGGACGCTGTTTCTGGATGAAGTGGCTGATCTG
CCGCTGGCGATGCAGGTGAAACTGCTCCGCGCGATCCAGGAAAAATCCGTCCGCGCGATTGGCGGCCAGCAGGAGCAAGT
GGTGGACGTTCGCGTGCTGTGCGCGACTCACAAGGACCTCAATCAGGAAGTAGCCGCCGGCCGTTTTCGGCAGGATTTGT
ATTACCGGCTGAACGTCATCGAACTGCGCGTCCCGCCCTTGCGCGAGCGCCGCGAAGACATTGAAGAGATCGCCAACAGC
GTGCTGCGCCGCCTGGCCGAATCCGCCGGAGAGCCTGCCACCCTCCTCCCGCCCCACGCGCTGGCGGCCCTCAAGGGTTA
TCGTTTTCCCGGCAATGTGCGCGAGCTGGAAAACATGCTGGAACGGGCCTACACGTTGTGCGAAGACGATCAGATCAATA
TCGAGGACCTGCGCCTTGCCGAGCCGTCACGCCCTACCGAGCAGGACGGCCCGAGCCTGGCCAACATCGATAACCTGGAA
GACTATCTGGAGAGCATCGAGCGCAAACTGATCCTGCAGGCGCTGGAGGAAACTCGCTGGAATCGTACGGCGGCGGCGCA
GCGTTTGAATTTGACGTTCAGGTCGATGCGTTATCGGTTGAAGAAGTTGGGGTTGGAGTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	80.587	99.327	0.8
pilR	Acinetobacter baumannii strain A118	48.38	100	0.502
luxO	Vibrio cholerae strain A1552	38.427	99.776	0.383