Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   JN403_RS00855 Genome accession   NZ_CP068986
Coordinates   190513..192105 (+) Length   530 a.a.
NCBI ID   WP_205484825.1    Uniprot ID   -
Organism   Pseudomonas sp. 15A4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 185513..197105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN403_RS00835 (JN403_00835) pgeF 187259..187987 (-) 729 WP_205484824.1 peptidoglycan editing factor PgeF -
  JN403_RS00840 (JN403_00840) rluD 187996..188958 (-) 963 WP_074890541.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JN403_RS00845 (JN403_00845) - 189109..190131 (+) 1023 WP_122535375.1 outer membrane protein assembly factor BamD -
  JN403_RS00850 (JN403_00850) - 190284..190523 (+) 240 WP_122622740.1 PP0621 family protein -
  JN403_RS00855 (JN403_00855) pilS 190513..192105 (+) 1593 WP_205484825.1 ATP-binding protein Regulator
  JN403_RS00860 (JN403_00860) pilR 192108..193448 (+) 1341 WP_205484826.1 sigma-54 dependent transcriptional regulator Regulator
  JN403_RS00865 (JN403_00865) thiO 193528..194631 (-) 1104 WP_205487198.1 glycine oxidase ThiO -
  JN403_RS00870 (JN403_00870) - 194662..195054 (-) 393 WP_205484827.1 type IV pilin protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58468.65 Da        Isoelectric Point: 6.4508

>NTDB_id=531792 JN403_RS00855 WP_205484825.1 190513..192105(+) (pilS) [Pseudomonas sp. 15A4]
MTADSLSLTTPQAQRILRLYHLYRLSIGVLLVLLISSSLDAELLELADIELFRIGCWLYLVFNILVVVLLERPSRQGQLF
SLAMADTLMLAALFYAGGGAPSGIGNLIIASVAISNVLLRKRTGLLIAALSAIGIIYLTFYISYHKPSASNHFVQAGSLG
ALCFAAALLVQALARRLQLSEDIAERRAADVDNLEELNALILQRMRTGILVLDEDNKVLLANQSALNLLGHERLLGEIVD
AYSPQLVERLGQWMANPSMAPRSITTSVIGPVLRPGFIALARGSHRHTLVFLDDLSQISQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLLESEELTAPDRRLSQIIHDQSRRMNLVIENVLQLSRRRQTEPHLLDLKQWIEDFVRILRSDLTAD
QAVHLDIGPGVLSTQMDAEQLQQVMSNLVQNGLRYSGQLHEHAQVWLRLFQAPFSELPTLEVLDDGPGVAEEHLGKIFEP
FFTTESKGTGLGLYLSRELCESNQASLNYTPREGGGSCMRITFAHPFKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=531792 JN403_RS00855 WP_205484825.1 190513..192105(+) (pilS) [Pseudomonas sp. 15A4]
GTGACCGCTGACAGCCTGTCGCTGACCACGCCTCAGGCCCAACGCATCCTGCGGCTGTATCACCTGTACCGTCTGAGTAT
CGGCGTCCTGCTGGTGCTGCTGATTTCCAGCAGCCTGGACGCCGAGTTGCTGGAGCTGGCCGATATCGAGCTGTTCCGGA
TCGGCTGCTGGCTGTATCTGGTGTTCAATATCCTCGTGGTGGTGCTGCTCGAACGCCCGAGCCGCCAGGGTCAACTGTTC
TCCCTGGCCATGGCCGACACGCTGATGCTGGCGGCGCTGTTCTACGCCGGGGGCGGTGCACCGAGCGGTATTGGCAATTT
GATCATTGCCTCCGTGGCGATCAGCAACGTGCTGCTGCGCAAGCGAACCGGGCTGCTGATTGCCGCGCTCTCAGCCATCG
GCATCATTTATCTGACCTTCTACATCAGCTATCACAAGCCCTCTGCTTCCAATCATTTCGTACAGGCCGGCTCCCTCGGT
GCCCTGTGCTTCGCAGCAGCGCTGCTGGTTCAGGCCCTCGCACGGCGCCTGCAGCTCAGCGAAGACATCGCCGAACGTCG
TGCCGCCGATGTCGACAATCTTGAAGAGCTCAACGCGCTGATCCTGCAACGTATGCGGACCGGCATTCTGGTGCTCGACG
AAGATAACAAAGTTCTACTCGCCAACCAGAGCGCGCTGAATCTGCTGGGCCACGAGCGCTTGCTCGGCGAAATCGTCGAC
GCCTACTCGCCACAACTGGTCGAGCGACTGGGTCAGTGGATGGCCAACCCGTCCATGGCACCGCGCAGCATCACCACCTC
GGTCATAGGGCCGGTGCTGCGCCCGGGGTTCATCGCACTGGCGCGGGGCAGTCATCGACACACCCTGGTGTTTCTCGATG
ACCTGTCCCAGATTTCCCAGCAGGCCCAACAGCTCAAACTCGCCGCGCTGGGCAGACTGACCGCTGGTATCGCCCACGAG
ATCCGCAACCCGCTGGGCGCCATCAGTCATGCCGCACAGTTGCTGCTGGAATCCGAGGAACTGACCGCGCCGGACCGTCG
TCTCAGTCAAATCATTCACGATCAATCGCGGCGGATGAATCTGGTGATCGAGAACGTGCTGCAGCTGTCTCGTCGACGCC
AGACCGAACCCCACCTGCTCGATCTCAAGCAGTGGATCGAGGACTTCGTCCGTATCCTGCGCAGTGACCTGACGGCTGAT
CAGGCCGTGCACCTGGACATCGGTCCGGGCGTGCTCAGTACGCAGATGGACGCAGAGCAGTTGCAGCAAGTGATGAGCAA
TCTGGTGCAAAACGGGCTGCGCTACAGCGGCCAGCTGCACGAACACGCCCAAGTGTGGCTAAGGTTGTTTCAAGCCCCGT
TCAGCGAACTGCCGACGCTGGAAGTCCTCGACGACGGGCCGGGTGTTGCCGAAGAGCATCTCGGGAAAATCTTCGAGCCC
TTCTTCACCACCGAAAGCAAAGGAACCGGCCTGGGCCTGTACCTTTCGCGCGAGCTGTGCGAAAGCAATCAGGCGAGCCT
CAATTACACTCCACGGGAAGGTGGCGGTAGCTGCATGCGAATAACCTTCGCCCATCCGTTCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(202-251)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

62.712

100

0.628