Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JNE37_RS20165 Genome accession   NZ_CP068983
Coordinates   4146237..4146740 (-) Length   167 a.a.
NCBI ID   WP_035037580.1    Uniprot ID   A0AA41QMV9
Organism   Paradevosia shaoguanensis strain J5-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4141237..4151740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE37_RS20145 - 4141479..4141892 (-) 414 WP_203064580.1 helix-turn-helix domain-containing protein -
  JNE37_RS20150 - 4142054..4142950 (+) 897 WP_246513381.1 NAD(P)H-binding protein -
  JNE37_RS20155 - 4143121..4145391 (+) 2271 WP_035094944.1 MMPL family transporter -
  JNE37_RS20160 - 4145388..4145915 (+) 528 WP_203064581.1 hypothetical protein -
  JNE37_RS20165 ssb 4146237..4146740 (-) 504 WP_035037580.1 single-stranded DNA-binding protein Machinery gene
  JNE37_RS20170 uvrA 4147182..4150067 (+) 2886 WP_035037577.1 excinuclease ABC subunit UvrA -
  JNE37_RS20175 - 4150270..4150422 (+) 153 WP_156046482.1 hypothetical protein -
  JNE37_RS20180 - 4150621..4150770 (+) 150 WP_081840784.1 DUF1127 domain-containing protein -
  JNE37_RS20185 - 4150855..4151502 (-) 648 WP_203064582.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17880.62 Da        Isoelectric Point: 5.9484

>NTDB_id=531779 JNE37_RS20165 WP_035037580.1 4146237..4146740(-) (ssb) [Paradevosia shaoguanensis strain J5-3]
MAGSVNKVILIGNLGNDPEVRSLPSGGKVVNLSVATTDTWRDRNTGERKERTEWHRVVIFNEGLTKVAEQYLRKGSKVYI
EGALQTRKWQDQSGQDRYSTEVVLQNFNSNLTMLDGRGDNEGGGFSGPRGGEGGFGGPSSGGGGGQSRRPSSAPAFESGG
MDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=531779 JNE37_RS20165 WP_035037580.1 4146237..4146740(-) (ssb) [Paradevosia shaoguanensis strain J5-3]
ATGGCGGGCAGCGTCAACAAGGTCATATTGATCGGCAATCTGGGGAACGACCCCGAAGTCCGGTCGCTGCCGAGCGGCGG
CAAGGTGGTGAACCTGAGCGTGGCCACGACCGATACCTGGCGCGATCGCAATACCGGCGAGCGCAAGGAACGGACGGAAT
GGCACCGCGTGGTGATCTTCAATGAAGGTCTCACCAAGGTGGCCGAGCAATATCTGCGCAAGGGCAGCAAGGTCTACATC
GAAGGCGCGCTGCAGACGCGCAAGTGGCAGGACCAGAGCGGGCAGGACCGCTATTCGACCGAGGTCGTGCTGCAGAACTT
CAATTCGAACCTGACGATGCTCGATGGACGCGGCGACAACGAGGGCGGCGGTTTCTCCGGCCCGCGTGGCGGCGAAGGCG
GCTTCGGTGGCCCATCTTCGGGTGGCGGCGGCGGCCAGAGCCGTCGTCCCTCCAGCGCCCCGGCCTTCGAGTCCGGCGGC
ATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.19

100

0.581
  ssb Glaesserella parasuis strain SC1401

49.215

100

0.563
  ssb Neisseria meningitidis MC58

41.848

100

0.461
  ssb Neisseria gonorrhoeae MS11

40.659

100

0.443