Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   P795_RS04290 Genome accession   NC_023028
Coordinates   914392..915396 (-) Length   334 a.a.
NCBI ID   WP_001154002.1    Uniprot ID   A3M7W1
Organism   Acinetobacter baumannii ZW85-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 909392..920396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P795_RS04265 (P795_4170) tolA 909654..911057 (-) 1404 WP_001039151.1 cell envelope integrity protein TolA -
  P795_RS04270 (P795_4175) tolR 911061..911513 (-) 453 WP_001007562.1 protein TolR -
  P795_RS04275 (P795_4180) tolQ 911513..912211 (-) 699 WP_000224630.1 protein TolQ -
  P795_RS04280 (P795_4185) ybgC 912235..912642 (-) 408 WP_001273591.1 tol-pal system-associated acyl-CoA thioesterase -
  P795_RS04285 (P795_4190) - 912853..914187 (-) 1335 WP_023896326.1 M20 family metallopeptidase -
  P795_RS04290 (P795_4195) ruvB 914392..915396 (-) 1005 WP_001154002.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  P795_RS04295 (P795_4200) ruvA 915405..916004 (-) 600 WP_000578663.1 Holliday junction branch migration protein RuvA -
  P795_RS04300 (P795_4205) - 916096..917436 (-) 1341 WP_023896327.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36815.05 Da        Isoelectric Point: 4.7936

>NTDB_id=53142 P795_RS04290 WP_001154002.1 914392..915396(-) (ruvB) [Acinetobacter baumannii ZW85-1]
MQDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPPGLGKTTLANIIAREMGGNL
KSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTR
AGLLTSPLRDRFGIVQRLEFYSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVN
HEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTARGRIATNQ
SYLQFGMTPPEPKN

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=53142 P795_RS04290 WP_001154002.1 914392..915396(-) (ruvB) [Acinetobacter baumannii ZW85-1]
ATGCAAGACCGTCTAATCAGTGGAACAGAAAAACCTGAAGATCATTTTGATCGGGCTATTCGACCGACTTCACTTGCCGA
TTATATCGGGCAACCAGTCGTACGCGAGCAAATGGAAATTTTCATCGGTGCGGCTCGTGGTCGTGGTGAAGCACTCGATC
ACACACTGATTTTCGGTCCACCGGGCTTAGGAAAAACCACGCTTGCCAATATTATTGCGCGTGAAATGGGTGGCAATCTC
AAATCCACTTCAGGGCCTGTTTTAGAGCGTGCGGGTGATTTGGCTGCAATGCTGACTAACCTTGAAGAAGGCGATGTTTT
ATTTATTGATGAAATTCACCGTCTTTCACCAGTAATTGAAGAAATTCTGTATCCGGCAATGGAAGATTACCAACTCGATA
TCATGATTGGTGAAGGCCCTGCTGCTCGTTCAATTAAACTCGATTTACCACCTTTTACGCTCGTTGCTGCGACCACACGT
GCCGGCTTACTCACCTCGCCTCTACGTGACCGTTTCGGTATTGTGCAACGTCTTGAATTCTATTCTGTAGAAGACTTAAC
TCACATCGTGTCACGATCTGCAAACCTCATGGATGTACCCATTACAGTTGAGGGTGCAGAAGAAGTTGCACGCCGTTCAC
GCGGAACACCGCGTATTGCCAATCGTTTATTACGCCGTGTACGTGACTATGCACAAGTAAAAGGTACAGGCGAAGTTAAC
CATGAAATGGCACAACGTGCGCTTGATATGCTCAATGTCGATAAAGCTGGTTTAGATACCTTAGACCGACGTTATTTAAG
TATGCTGTTAGAACGTTTTGATGGTGGACCTGCTGGTGTTGAAGCCCTTGCAGCTGCTATGGCTGAAGATAGCGGAACAC
TTGAAGATGTTATTGAACCTTATTTAATTCAGCAAGGTTATGTTATGCGTACTGCACGAGGTCGCATTGCAACCAACCAA
TCTTATTTGCAGTTTGGCATGACGCCACCTGAGCCTAAAAACTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-322)

RuvB AAA lid domain (AAA_lid_4)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3M7W1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

57.704

99.102

0.572
  ruvB Synechocystis sp. PCC 6803

57.325

94.012

0.539
  ruvB Streptococcus pneumoniae TIGR4

56.113

95.509

0.536
  ruvB Streptococcus pneumoniae R6

56.113

95.509

0.536
  ruvB Streptococcus pneumoniae D39

56.113

95.509

0.536
  ruvB Helicobacter pylori 26695

54.934

91.018

0.5

Multiple sequence alignment