Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JNN40_RS13285 Genome accession   NZ_CP068802
Coordinates   2762164..2762700 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain RIVM_C018249     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2757164..2767700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN40_RS13265 (JNN40_13265) soxR 2758891..2759355 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  JNN40_RS13270 (JNN40_13270) soxS 2759441..2759764 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  JNN40_RS13275 (JNN40_13275) pdeC 2759767..2761353 (-) 1587 WP_000019572.1 c-di-GMP phosphodiesterase PdeC -
  JNN40_RS13280 (JNN40_13280) yjcB 2761783..2762064 (+) 282 WP_001295689.1 YjcB family protein -
  JNN40_RS13285 (JNN40_13285) ssb 2762164..2762700 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JNN40_RS13290 (JNN40_13290) uvrA 2762954..2765776 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA -
  JNN40_RS13295 (JNN40_13295) yjbR 2765811..2766167 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  JNN40_RS13300 (JNN40_13300) yjbQ 2766171..2766587 (-) 417 WP_000270370.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JNN40_RS13305 (JNN40_13305) aphA 2766698..2767411 (-) 714 WP_001468912.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=531014 JNN40_RS13285 WP_000168305.1 2762164..2762700(-) (ssb) [Escherichia coli strain RIVM_C018249]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=531014 JNN40_RS13285 WP_000168305.1 2762164..2762700(-) (ssb) [Escherichia coli strain RIVM_C018249]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGATTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489