Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JK621_RS18655 Genome accession   NZ_CP068771
Coordinates   3996569..3997105 (+) Length   178 a.a.
NCBI ID   WP_212557141.1    Uniprot ID   -
Organism   Serratia plymuthica strain UBCF_13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3991569..4002105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JK621_RS18640 (JK621_18640) maa 3991576..3992133 (+) 558 WP_020439896.1 maltose O-acetyltransferase -
  JK621_RS18645 (JK621_18645) - 3992168..3993220 (-) 1053 WP_062868864.1 NAD(P)-dependent alcohol dehydrogenase -
  JK621_RS18650 (JK621_18650) uvrA 3993457..3996282 (-) 2826 WP_212557140.1 excinuclease ABC subunit UvrA -
  JK621_RS18655 (JK621_18655) ssb 3996569..3997105 (+) 537 WP_212557141.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JK621_RS18660 (JK621_18660) - 3997168..3997917 (-) 750 WP_212557142.1 3-oxoacyl-ACP reductase family protein -
  JK621_RS18665 (JK621_18665) - 3998048..3998965 (+) 918 WP_212557143.1 LysR family transcriptional regulator -
  JK621_RS18670 (JK621_18670) - 3999023..3999283 (-) 261 WP_212557144.1 YdgH/BhsA/McbA-like domain containing protein -
  JK621_RS18675 (JK621_18675) - 3999481..4000149 (+) 669 WP_212557145.1 glutathione S-transferase -
  JK621_RS18680 (JK621_18680) - 4000196..4000603 (+) 408 WP_212557146.1 VOC family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18659.65 Da        Isoelectric Point: 5.2456

>NTDB_id=530869 JK621_RS18655 WP_212557141.1 3996569..3997105(+) (ssb) [Serratia plymuthica strain UBCF_13]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQASGGQGGWGQPQQPQGGNQFSGGQQARPAQSNA
PAAGGNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=530869 JK621_RS18655 WP_212557141.1 3996569..3997105(+) (ssb) [Serratia plymuthica strain UBCF_13]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGCCAAGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACTGGCGAGCAGAAAGAAAAAACCG
AGTGGCACCGCGTTGTGTTGTTCGGCAAGCTGGCTGAAGTGGCGGGCGAATATCTGCGTAAAGGTTCCCAGGTGTATATC
GAAGGTGCTCTGCAGACCCGTAAATGGACCGATCAGGCCGGCGTAGAAAAATACACCACCGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAAGGCGGCGGCGCACCTGCAGGCGGTGGCCAGGCTTCCGGCGGCCAGGGCG
GTTGGGGCCAGCCTCAGCAACCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGGCGCGCCCAGCGCAGAGCAACGCG
CCGGCAGCCGGCGGCAACGAACCGCCAATGGACTTCGACGACGATATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.033

100

0.753
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.584
  ssb Neisseria meningitidis MC58

46.111

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.111

100

0.466