Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   K8351_RS06200 Genome accession   NZ_CP082947
Coordinates   1150251..1151591 (+) Length   446 a.a.
NCBI ID   WP_223375554.1    Uniprot ID   -
Organism   Campylobacter coli strain C203016     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1145251..1156591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8351_RS06170 (K8351_06135) - 1145646..1146203 (+) 558 WP_002777379.1 TlpA disulfide reductase family protein -
  K8351_RS06175 (K8351_06140) pilA 1146203..1147069 (+) 867 WP_002777377.1 signal recognition particle-docking protein FtsY Machinery gene
  K8351_RS06180 (K8351_06145) - 1147066..1148010 (-) 945 WP_052780904.1 GTP-binding protein -
  K8351_RS06185 (K8351_06150) - 1148003..1148338 (-) 336 WP_002777373.1 hypothetical protein -
  K8351_RS06190 (K8351_06155) - 1148380..1149261 (-) 882 WP_002781290.1 polysaccharide deacetylase -
  K8351_RS06195 (K8351_06160) - 1149264..1150115 (-) 852 WP_002784379.1 carbon-nitrogen hydrolase family protein -
  K8351_RS06200 (K8351_06165) radA/sms 1150251..1151591 (+) 1341 WP_223375554.1 DNA repair protein RadA Machinery gene
  K8351_RS06205 (K8351_06170) - 1151742..1152422 (+) 681 WP_002777368.1 F0F1 ATP synthase subunit A -
  K8351_RS06210 (K8351_06175) - 1152419..1152619 (+) 201 WP_002777366.1 hypothetical protein -
  K8351_RS06215 (K8351_06180) metF 1152629..1153477 (-) 849 WP_002777362.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  K8351_RS06220 (K8351_06185) metE 1153487..1155751 (-) 2265 WP_057037217.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  K8351_RS06225 (K8351_06190) - 1155774..1156544 (-) 771 WP_002781303.1 MetQ/NlpA family ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49148.09 Da        Isoelectric Point: 6.9145

>NTDB_id=530860 K8351_RS06200 WP_223375554.1 1150251..1151591(+) (radA/sms) [Campylobacter coli strain C203016]
MVKNKILFECQACGNQQSKWLGKCPECGSWDSFIELKSEQIKVLKEIAQASTKASEAICIEDVELEHFSRCSTDDDELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKKNKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKNYEILIIDSIQTLYSNKIASAAGSITQVREITFELMRVSKTYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTSEVGIFEMTPKGLISAKDLANRFFTRGKATSGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVRVNETAADLAVVAAIISSFKNRPLSKDCVFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIIPSKPLEDVGLKCFVAKELAQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=530860 K8351_RS06200 WP_223375554.1 1150251..1151591(+) (radA/sms) [Campylobacter coli strain C203016]
ATGGTTAAAAATAAAATTCTTTTTGAATGTCAAGCTTGCGGAAATCAGCAAAGCAAATGGCTTGGAAAATGTCCTGAGTG
TGGTTCTTGGGATAGTTTTATAGAATTAAAATCTGAACAAATTAAAGTTTTAAAAGAAATCGCACAAGCAAGTACAAAAG
CAAGCGAGGCTATCTGTATAGAAGATGTGGAGCTCGAGCATTTTTCAAGGTGTAGCACTGATGATGATGAGCTGGATTTG
GTTTTAGGTGGAGGGCTTGTTGAGGGTTCTTTGGTGCTTATAGGTGGTAGCCCTGGGGTTGGCAAATCTACACTTTTACT
AAAGATTGCTTCTAATTTGGCTAAAAAAAATAAAAAAGTTCTTTATGTAAGTGGAGAAGAAAGTAAGGCGCAAATCAAAT
TAAGAGCCGATCGTCTTGAGGCTAATACTCCTAATTTATTTTTACTTACAGAGCTTTGTCTTGAAAATATTTTAGAAGAA
TTGCATAAGAAAAATTATGAAATTCTTATCATCGACTCCATACAAACCTTATATTCAAATAAAATTGCTTCAGCGGCTGG
AAGTATCACTCAAGTGCGCGAGATCACTTTTGAACTTATGCGAGTAAGCAAAACTTACAATATCAGCACTTTTATAATAG
GACATATCACCAAAGAAGGAGCCATAGCAGGCCCTAGGGTTTTAGAGCATATGGTCGATGTGGTGCTTTATTTTGAAGGG
GATGCAACTAAAGAAATCAGGCTTTTAAGGGGTTTTAAAAATCGCTTTGGTGGCACAAGCGAGGTGGGAATTTTTGAAAT
GACTCCTAAGGGTTTAATTAGTGCAAAAGATTTAGCCAATCGTTTTTTTACGCGAGGTAAAGCTACTTCAGGCAGTGCTT
TAGGTGTTGTAATGGAGGGTTCTCGTGCTTTGGTTTTAGAGGTGCAAGCTCTAGTGTGCGAGAGTTCTTATCCTAAACGC
AGTGCCACAGGCTATGAAAAAAATCGTCTTGATATGCTTTTGGCTTTACTTGAAAGAAAATTAGAAATTCCTCTTGGTCA
TTATGATGTTTTTGTAAATATTAGCGGTGGAGTAAGGGTAAATGAAACTGCGGCTGATTTGGCTGTGGTTGCGGCCATTA
TTTCTAGTTTTAAAAATCGCCCTTTGAGTAAGGATTGTGTTTTTATAGGGGAATTGAGTTTAAATGGAGAAATAAGAGAA
GTTTTTAGTCTTGATACCCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCTATTATTCCATCTAAACCTTTAGA
AGATGTAGGGCTTAAATGCTTTGTAGCCAAAGAGCTTGCCCAAGTTTTAGAATGGATGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(71-220)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

45.139

96.861

0.437
  radA Streptococcus pneumoniae Rx1

44.24

97.309

0.43
  radA Streptococcus pneumoniae D39

44.24

97.309

0.43
  radA Streptococcus pneumoniae R6

44.24

97.309

0.43
  radA Streptococcus pneumoniae TIGR4

44.24

97.309

0.43
  radA Streptococcus mitis SK321

44.213

96.861

0.428
  radA Streptococcus mitis NCTC 12261

44.213

96.861

0.428