Detailed information NTG0530860

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: JK621_RS14870
• Genome accession: NZ_CP068771
• Coordinates: 3181997..3182524 (-)
• Length: 175 a.a.
• NCBI ID: WP_212556660.1
• Uniprot ID: -
• Organism: Serratia plymuthica strain UBCF_13
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3178874..3194409	3181997..3182524	within	0

Gene organization within MGE regions

Location: 3178874..3194409

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JK621_RS14855 (JK621_14855)	-	3178874..3179146 (-)	273	WP_072270381.1	DUF2442 domain-containing protein	-
JK621_RS14860 (JK621_14860)	-	3179127..3179369 (-)	243	WP_212556658.1	DUF4160 domain-containing protein	-
JK621_RS14865 (JK621_14865)	-	3179523..3181403 (-)	1881	WP_212556659.1	reverse transcriptase domain-containing protein	-
JK621_RS14870 (JK621_14870)	ssb	3181997..3182524 (-)	528	WP_212556660.1	single-stranded DNA-binding protein	Machinery gene
JK621_RS14875 (JK621_14875)	-	3182597..3183064 (-)	468	WP_212556661.1	STY4534 family ICE replication protein	-
JK621_RS14880 (JK621_14880)	-	3183778..3185817 (-)	2040	WP_212556662.1	DNA topoisomerase III	-
JK621_RS14885 (JK621_14885)	-	3185830..3186405 (-)	576	WP_212556663.1	hypothetical protein	-
JK621_RS14890 (JK621_14890)	-	3186402..3187163 (-)	762	WP_212560207.1	PFL_4669 family integrating conjugative element protein	-
JK621_RS14895 (JK621_14895)	-	3187459..3188733 (-)	1275	WP_212556664.1	STY4528 family pathogenicity island replication protein	-
JK621_RS14900 (JK621_14900)	-	3188847..3189110 (-)	264	WP_212556665.1	hypothetical protein	-
JK621_RS14905 (JK621_14905)	-	3189107..3189736 (-)	630	WP_060422762.1	DUF2857 domain-containing protein	-
JK621_RS14910 (JK621_14910)	-	3189947..3190669 (-)	723	WP_115058004.1	DUF2786 domain-containing protein	-
JK621_RS14915 (JK621_14915)	-	3190669..3192399 (-)	1731	WP_212556666.1	ParB family protein	-
JK621_RS14920 (JK621_14920)	dnaB-PI	3192402..3193751 (-)	1350	WP_212556667.1	SPI-7-type island replicative DNA helicase	-
JK621_RS14925 (JK621_14925)	-	3193744..3194409 (-)	666	WP_172906324.1	hypothetical protein	-

Sequence

Protein

• Length: 175 a.a.
• Molecular weight: 18930.22 Da
• Isoelectric Point: 8.4611

>NTDB_id=530860 JK621_RS14870 WP_212556660.1 3181997..3182524(-) (ssb) [Serratia plymuthica strain UBCF_13]
MASRGVNKVILVGHLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWTDQAGIEKYTTEIVVNIGGTLQMLGGRSQPANAGQSGQGSWGKPQQPQPSHSGTPAQQPQPAQSGGNAAPM
DFDDDIPFLVRRFAL

Nucleotide

• Length: 528 bp

>NTDB_id=530860 JK621_RS14870 WP_212556660.1 3181997..3182524(-) (ssb) [Serratia plymuthica strain UBCF_13]
ATGGCGTCTCGCGGCGTAAACAAAGTCATACTTGTCGGTCATCTCGGCCAGGATCCGGAAGTCCGTTACATGCCAAATGG
CGGTGCGGTTGCTAACATTACCCTGGCGACCTCTGAGAGCTGGCGCGATAAGGCGACCGGTGAGCAGAAAGAAAAAACCG
AATGGCACCGTGTTGTGTTGTTCGGCAAGCTTGCTGAAATTGCCGGTGAATATTTGCGTAAAGGCTCGCAGGTTTACATT
GAAGGCTCCCTGCAGACACGTAAATGGACCGATCAGGCCGGTATTGAAAAATACACCACTGAAATCGTCGTCAACATTGG
CGGCACTCTGCAGATGTTGGGTGGGCGTTCGCAACCAGCCAACGCAGGACAATCAGGCCAGGGCAGTTGGGGGAAACCTC
AGCAACCGCAACCTTCACACAGCGGTACGCCGGCTCAGCAACCCCAGCCGGCTCAATCGGGTGGAAATGCCGCGCCGATG
GATTTTGACGATGACATACCGTTCCTTGTGCGCCGTTTTGCTTTGTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	69.444	100	0.714
ssb	Glaesserella parasuis strain SC1401	51.934	100	0.537
ssb	Neisseria meningitidis MC58	47.253	100	0.491
ssb	Neisseria gonorrhoeae MS11	46.703	100	0.486