Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JMJ48_RS05140 Genome accession   NZ_CP068761
Coordinates   1000970..1001494 (-) Length   174 a.a.
NCBI ID   WP_003695064.1    Uniprot ID   Q5F7Y0
Organism   Neisseria gonorrhoeae strain 20181204     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 995970..1006494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ48_RS05125 (JMJ48_05125) tkt 996098..998077 (+) 1980 WP_003688227.1 transketolase -
  JMJ48_RS05130 (JMJ48_05130) fumC 998221..999609 (+) 1389 WP_003691001.1 class II fumarate hydratase -
  JMJ48_RS05135 (JMJ48_05135) - 999674..1000597 (-) 924 WP_003699810.1 DMT family transporter -
  JMJ48_RS05140 (JMJ48_05140) ssb 1000970..1001494 (-) 525 WP_003695064.1 single-stranded DNA-binding protein Machinery gene
  JMJ48_RS05145 (JMJ48_05145) - 1001498..1002880 (-) 1383 WP_003688217.1 MFS transporter -
  JMJ48_RS05150 (JMJ48_05150) - 1002992..1003615 (-) 624 WP_003688215.1 lytic transglycosylase domain-containing protein -
  JMJ48_RS05155 (JMJ48_05155) - 1004117..1004383 (-) 267 Protein_1019 transposase -
  JMJ48_RS05160 (JMJ48_05160) - 1004420..1004910 (-) 491 Protein_1020 REP-associated tyrosine transposase -
  JMJ48_RS05165 (JMJ48_05165) - 1005275..1006036 (-) 762 Protein_1021 opacity family porin -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19448.66 Da        Isoelectric Point: 5.8313

>NTDB_id=530800 JMJ48_RS05140 WP_003695064.1 1000970..1001494(-) (ssb) [Neisseria gonorrhoeae strain 20181204]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYDEGYGQSQEAYQRPAQQSRQPAPDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=530800 JMJ48_RS05140 WP_003695064.1 1000970..1001494(-) (ssb) [Neisseria gonorrhoeae strain 20181204]
ATGTCATTGAACAAAGTCATCCTTATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCAGT
GTGTAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAGCGCGTAGAGCGCACCGAATGGCACAACA
TCACGATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATCTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGCACCGCTTACGATATTGTCGCCAATGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGCGCGCCTTACGATGAAGGTTACGGTCAGAGTCAGGAGGCTTACCAACGCCCCGCTC
AGCAAAGCCGGCAGCCCGCTCCCGACGCGCCGTCCCATCCCCAAGAAGCACCCGCCGCGCCGCGCCGCCAACCCGTGCCG
GCCGCCGCCCCGGTCGAGGACATTGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F7Y0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

100

100

1
  ssb Neisseria meningitidis MC58

98.851

100

0.989
  ssb Vibrio cholerae strain A1552

47.778

100

0.494
  ssb Glaesserella parasuis strain SC1401

44.505

100

0.466