Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JM956_RS28345 Genome accession   NZ_CP068719
Coordinates   5535591..5536103 (-) Length   170 a.a.
NCBI ID   WP_000981966.1    Uniprot ID   A0A0A3WKS9
Organism   Bacillus cereus strain 21155     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5530591..5541103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM956_RS28325 rplI 5531801..5532247 (-) 447 WP_000864228.1 50S ribosomal protein L9 -
  JM956_RS28330 - 5532244..5534217 (-) 1974 WP_202822403.1 DHH family phosphoesterase -
  JM956_RS28335 - 5534296..5535231 (-) 936 WP_000806422.1 YybS family protein -
  JM956_RS28340 rpsR 5535312..5535545 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  JM956_RS28345 ssbA 5535591..5536103 (-) 513 WP_000981966.1 single-stranded DNA-binding protein Machinery gene
  JM956_RS28350 rpsF 5536130..5536420 (-) 291 WP_001233778.1 30S ribosomal protein S6 -
  JM956_RS28355 ychF 5536612..5537712 (-) 1101 WP_000524671.1 redox-regulated ATPase YchF -
  JM956_RS28360 - 5537828..5538025 (-) 198 WP_000435485.1 DUF951 domain-containing protein -
  JM956_RS28365 - 5538046..5538927 (-) 882 WP_000364811.1 mechanosensitive ion channel family protein -
  JM956_RS28370 yyaC 5539187..5539783 (+) 597 WP_001020713.1 spore protease YyaC -
  JM956_RS28375 spo0J 5539804..5540655 (-) 852 WP_001051832.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18494.29 Da        Isoelectric Point: 4.9327

>NTDB_id=530720 JM956_RS28345 WP_000981966.1 5535591..5536103(-) (ssbA) [Bacillus cereus strain 21155]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=530720 JM956_RS28345 WP_000981966.1 5535591..5536103(-) (ssbA) [Bacillus cereus strain 21155]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTGCAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3WKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.43

100

0.394