Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JM955_RS27835 Genome accession   NZ_CP068717
Coordinates   5493608..5494129 (-) Length   173 a.a.
NCBI ID   WP_002094213.1    Uniprot ID   A0A9W7QTR5
Organism   Bacillus cereus strain CH     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5488608..5499129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM955_RS27815 rplI 5489818..5490264 (-) 447 WP_000864223.1 50S ribosomal protein L9 -
  JM955_RS27820 - 5490261..5492234 (-) 1974 WP_001113779.1 DHH family phosphoesterase -
  JM955_RS27825 - 5492313..5493248 (-) 936 WP_063549237.1 YybS family protein -
  JM955_RS27830 rpsR 5493329..5493562 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  JM955_RS27835 ssbA 5493608..5494129 (-) 522 WP_002094213.1 single-stranded DNA-binding protein Machinery gene
  JM955_RS27840 rpsF 5494156..5494446 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  JM955_RS27845 ychF 5494638..5495738 (-) 1101 WP_000524670.1 redox-regulated ATPase YchF -
  JM955_RS27850 - 5495854..5496051 (-) 198 WP_000435486.1 DUF951 domain-containing protein -
  JM955_RS27855 - 5496072..5496953 (-) 882 WP_063549239.1 mechanosensitive ion channel family protein -
  JM955_RS27860 yyaC 5497213..5497809 (+) 597 WP_063549241.1 spore protease YyaC -
  JM955_RS27865 spo0J 5497830..5498681 (-) 852 WP_001051832.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18779.55 Da        Isoelectric Point: 4.9222

>NTDB_id=530670 JM955_RS27835 WP_002094213.1 5493608..5494129(-) (ssbA) [Bacillus cereus strain CH]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=530670 JM955_RS27835 WP_002094213.1 5493608..5494129(-) (ssbA) [Bacillus cereus strain CH]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGAAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGACGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.813

100

0.387