Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   K8P00_RS01250 Genome accession   NZ_CP082861
Coordinates   243983..245275 (+) Length   430 a.a.
NCBI ID   WP_003824721.1    Uniprot ID   -
Organism   Eikenella corrodens strain FDAARGOS_1474     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 238983..250275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P00_RS01220 (K8P00_01210) - 239142..239795 (+) 654 WP_157727247.1 IS1595 family transposase -
  K8P00_RS01225 (K8P00_01215) - 239803..240042 (-) 240 WP_155733664.1 hypothetical protein -
  K8P00_RS01230 (K8P00_01220) - 240051..240401 (-) 351 WP_095114595.1 hypothetical protein -
  K8P00_RS01235 (K8P00_01225) - 240910..242930 (-) 2021 Protein_243 UvrD-helicase domain-containing protein -
  K8P00_RS01240 (K8P00_01230) - 243022..243327 (-) 306 WP_003824724.1 RnfH family protein -
  K8P00_RS01245 (K8P00_01235) - 243320..243757 (-) 438 WP_003824723.1 type II toxin-antitoxin system RatA family toxin -
  K8P00_RS01250 (K8P00_01240) dprA 243983..245275 (+) 1293 WP_003824721.1 DNA-processing protein DprA Machinery gene
  K8P00_RS01255 (K8P00_01245) - 245272..245742 (+) 471 WP_003824720.1 DUF494 family protein -
  K8P00_RS01260 (K8P00_01250) topA 245931..248231 (+) 2301 WP_003824719.1 type I DNA topoisomerase -
  K8P00_RS01265 (K8P00_01255) - 248469..248705 (-) 237 WP_003824718.1 GlsB/YeaQ/YmgE family stress response membrane protein -

Sequence

Protein


Download         Length: 430 a.a.        Molecular weight: 46357.18 Da        Isoelectric Point: 5.2119

>NTDB_id=530530 K8P00_RS01250 WP_003824721.1 243983..245275(+) (dprA) [Eikenella corrodens strain FDAARGOS_1474]
MENSAERLAWIQLALMPYIGAETFYELCRHYGSAAAVWAAEQEVGDILPSRPAQEAWRSRRHEAEAAAEAALAWEQQENC
RLLLACDADFPPQLGEGITAPPLLFARGNTEWLHRPSVAIVGSRHATPQAMRIAGEFGEALAAAGIVTVSGMAAGIDSAA
HEGALRKQGGTVAVWGTGIDRVYPVANKALAHRIAEQGCVLSEFPLGTSPLAGNFPRRNRLIAALSSAVLVVEAALESGS
LITARLAADMGREVFAVPGSIDNPHSKGCHALIKQGAKLTETLADILEECPQLPQTASTSRQTAAQTKRLPENERSEFLR
SKNERSEFRQNERSEFLQNQNADVEHRQAESLPSEQPALVDATPASTETETSPLLQAMGYDAVHPDSLAERLKLPAADVY
AELTLLEINGQIAPLSGGRYQRIAPNRNTK

Nucleotide


Download         Length: 1293 bp        

>NTDB_id=530530 K8P00_RS01250 WP_003824721.1 243983..245275(+) (dprA) [Eikenella corrodens strain FDAARGOS_1474]
ATGGAAAACTCCGCAGAACGTTTGGCTTGGATACAGCTTGCGCTGATGCCGTATATCGGCGCGGAAACGTTTTACGAACT
CTGCCGCCACTACGGTTCTGCAGCTGCCGTGTGGGCTGCCGAGCAGGAAGTGGGCGACATCCTGCCCAGCCGCCCGGCGC
AGGAAGCCTGGCGCAGCCGCCGCCACGAGGCCGAGGCTGCCGCCGAAGCCGCGCTGGCATGGGAGCAGCAGGAAAACTGC
CGTTTATTGTTGGCTTGCGACGCAGATTTTCCGCCGCAATTGGGCGAAGGCATCACCGCACCGCCCTTATTGTTTGCCCG
CGGCAACACCGAATGGCTGCATCGGCCTTCAGTGGCCATCGTGGGCAGCCGGCACGCCACGCCGCAAGCGATGCGGATTG
CCGGTGAATTTGGCGAAGCCTTGGCCGCTGCCGGCATCGTAACCGTATCCGGCATGGCCGCCGGTATCGACAGCGCCGCC
CACGAAGGCGCGTTGCGCAAGCAGGGTGGCACGGTGGCGGTGTGGGGCACGGGCATCGACCGCGTATATCCCGTGGCCAA
CAAAGCACTGGCGCACCGCATTGCCGAACAAGGCTGCGTGCTCTCCGAATTCCCCTTGGGCACGAGTCCGTTGGCCGGCA
ACTTTCCGCGCCGCAACCGCCTGATTGCCGCCCTCTCCTCTGCCGTGCTGGTGGTGGAAGCTGCGTTGGAATCCGGTTCG
CTGATTACCGCGCGGCTGGCGGCAGACATGGGGCGCGAAGTGTTCGCCGTGCCCGGCTCCATCGACAACCCGCACAGCAA
AGGCTGCCACGCGCTGATTAAGCAAGGTGCGAAGCTTACCGAAACACTGGCCGATATTCTGGAAGAATGCCCGCAGCTGC
CGCAAACCGCATCGACTAGCCGCCAAACGGCAGCCCAAACCAAAAGGCTACCTGAAAACGAGCGCAGCGAGTTTCTACGT
AGTAAAAACGAGCGTAGCGAGTTTCGCCAAAACGAACGTAGTGAGTTTCTACAAAACCAAAACGCAGATGTCGAACATCG
CCAAGCCGAATCGCTCCCAAGCGAACAGCCAGCCTTGGTCGATGCCACACCGGCATCAACTGAAACCGAAACCTCACCGC
TGCTGCAAGCCATGGGCTACGACGCGGTACACCCCGACAGCTTGGCCGAGCGGCTCAAACTGCCCGCGGCCGATGTGTAT
GCCGAACTGACTTTATTAGAAATCAACGGCCAAATTGCCCCGCTCTCCGGCGGCCGTTACCAACGGATTGCTCCAAACAG
GAATACCAAATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-280)

DprA winged helix domain (WHD_DprA)

(362-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae strain FA1090

57.007

97.907

0.558
  dprA Neisseria gonorrhoeae MS11

56.532

97.907

0.553
  dprA Neisseria meningitidis strain C311

55.529

98.837

0.549
  dprA Neisseria meningitidis MC58

55.529

98.837

0.549