Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JKV46_RS23955 Genome accession   NZ_CP068696
Coordinates   4903091..4903621 (-) Length   176 a.a.
NCBI ID   WP_000168322.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica serovar Typhimurium strain NCCP16345     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4898091..4908621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKV46_RS23940 (JKV46_23815) siiC 4898724..4900043 (-) 1320 WP_001541306.1 SPI-4 type I secretion system protein SiiC -
  JKV46_RS23945 (JKV46_23820) - 4900033..4901421 (-) 1389 WP_000875195.1 MotA/TolQ/ExbB proton channel family protein -
  JKV46_RS23950 (JKV46_23825) siiA 4901418..4902050 (-) 633 WP_000389233.1 SPI-4 type I secretion system auxiliary protein SiiA -
  JKV46_RS23955 (JKV46_23830) ssb 4903091..4903621 (-) 531 WP_000168322.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19074.15 Da        Isoelectric Point: 5.2456

>NTDB_id=530452 JKV46_RS23955 WP_000168322.1 4903091..4903621(-) (ssb) [Salmonella enterica subsp. enterica serovar Typhimurium strain NCCP16345]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=530452 JKV46_RS23955 WP_000168322.1 4903091..4903621(-) (ssb) [Salmonella enterica subsp. enterica serovar Typhimurium strain NCCP16345]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGGGTGGTGATGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAATTGCGTACCCGCAAGTGGACCGATCAGAGTGGTCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGCGGCGTGATGCAGATGCTGGGTGGTCGCCAGGGCGGCGGCGCACCGGCAGGCGGTCAGCAGCAGGGGGGTTGGGGTC
AGCCGCAACAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.978

100

0.744
  ssb Glaesserella parasuis strain SC1401

60.109

100

0.625
  ssb Neisseria gonorrhoeae MS11

46.448

100

0.483
  ssb Neisseria meningitidis MC58

46.409

100

0.477