Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JMY88_RS01515 Genome accession   NZ_CP068684
Coordinates   321677..322201 (+) Length   174 a.a.
NCBI ID   WP_004151744.1    Uniprot ID   -
Organism   Klebsiella pneumoniae subsp. pneumoniae strain RJBSI76-pV     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 316677..327201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMY88_RS01495 (JMY88_01495) aphA 316979..317692 (+) 714 WP_004151745.1 acid phosphatase AphA -
  JMY88_RS01500 (JMY88_01500) - 317823..318239 (+) 417 WP_002884951.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JMY88_RS01505 (JMY88_01505) - 318243..318599 (+) 357 WP_002884953.1 MmcQ/YjbR family DNA-binding protein -
  JMY88_RS01510 (JMY88_01510) uvrA 318600..321425 (-) 2826 WP_004146620.1 excinuclease ABC subunit UvrA -
  JMY88_RS01515 (JMY88_01515) ssb 321677..322201 (+) 525 WP_004151744.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JMY88_RS01520 (JMY88_01520) - 322326..323906 (-) 1581 WP_002885017.1 lytic transglycosylase F -
  JMY88_RS01525 (JMY88_01525) - 324493..326751 (+) 2259 WP_002885019.1 TonB-dependent siderophore receptor -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18711.70 Da        Isoelectric Point: 5.2358

>NTDB_id=530387 JMY88_RS01515 WP_004151744.1 321677..322201(+) (ssb) [Klebsiella pneumoniae subsp. pneumoniae strain RJBSI76-pV]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=530387 JMY88_RS01515 WP_004151744.1 321677..322201(+) (ssb) [Klebsiella pneumoniae subsp. pneumoniae strain RJBSI76-pV]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCTGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCTGGTGAGTATCTGCGTAAAGGCTCACAGGTGTACATT
GAAGGCCAGCTGCGTACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACCGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCGCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGGCCCCGGCAGCGCCT
TCCAACGAACCGCCGATGGACTTCGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.776
  ssb Glaesserella parasuis strain SC1401

59.239

100

0.626
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5