Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | JKV48_RS04665 | Genome accession | NZ_CP068682 |
| Coordinates | 964321..964791 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain NCCP11854 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 954226..996654 | 964321..964791 | within | 0 |
Gene organization within MGE regions
Location: 954226..996654
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JKV48_RS04575 (JKV48_04550) | - | 954226..955431 (-) | 1206 | WP_000264751.1 | tyrosine-type recombinase/integrase | - |
| JKV48_RS04580 (JKV48_04555) | - | 955557..956171 (+) | 615 | WP_000191458.1 | hypothetical protein | - |
| JKV48_RS04585 (JKV48_04560) | - | 956168..956314 (-) | 147 | WP_001013104.1 | hypothetical protein | - |
| JKV48_RS04590 (JKV48_04565) | - | 956350..956532 (-) | 183 | WP_000705240.1 | hypothetical protein | - |
| JKV48_RS04595 (JKV48_04570) | - | 956602..957321 (-) | 720 | WP_000358224.1 | XRE family transcriptional regulator | - |
| JKV48_RS04600 (JKV48_04575) | - | 957463..957681 (+) | 219 | WP_001198673.1 | helix-turn-helix transcriptional regulator | - |
| JKV48_RS04605 (JKV48_04580) | - | 957697..958473 (+) | 777 | WP_001148544.1 | Rha family transcriptional regulator | - |
| JKV48_RS04610 (JKV48_04585) | - | 958502..958747 (+) | 246 | WP_001025401.1 | DUF2829 domain-containing protein | - |
| JKV48_RS04615 (JKV48_04590) | - | 958716..959081 (-) | 366 | WP_001128433.1 | hypothetical protein | - |
| JKV48_RS04620 (JKV48_04595) | - | 959136..959351 (+) | 216 | WP_001097552.1 | hypothetical protein | - |
| JKV48_RS04625 (JKV48_04600) | - | 959378..959641 (+) | 264 | WP_001124198.1 | helix-turn-helix domain-containing protein | - |
| JKV48_RS04630 (JKV48_04605) | - | 959653..959814 (+) | 162 | WP_031833131.1 | DUF1270 domain-containing protein | - |
| JKV48_RS04635 (JKV48_04610) | - | 959909..960211 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| JKV48_RS04640 (JKV48_04615) | - | 960216..960476 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| JKV48_RS04645 (JKV48_04620) | - | 960485..960748 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| JKV48_RS04650 (JKV48_04625) | - | 960757..962700 (+) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| JKV48_RS04655 (JKV48_04630) | - | 962702..963622 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| JKV48_RS04660 (JKV48_04635) | - | 963703..964320 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| JKV48_RS04665 (JKV48_04640) | ssbA | 964321..964791 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| JKV48_RS04670 (JKV48_04645) | - | 964821..965714 (+) | 894 | WP_000148333.1 | DnaD domain protein | - |
| JKV48_RS04675 (JKV48_04650) | - | 965721..965939 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| JKV48_RS04680 (JKV48_04655) | - | 965948..966352 (+) | 405 | Protein_930 | RusA family crossover junction endodeoxyribonuclease | - |
| JKV48_RS04685 (JKV48_04660) | - | 966365..966736 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| JKV48_RS04690 (JKV48_04665) | - | 966736..966993 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| JKV48_RS04695 (JKV48_04670) | - | 966996..967238 (+) | 243 | WP_000221877.1 | SAV1978 family virulence-associated passenger protein | - |
| JKV48_RS13595 | - | 967253..967378 (+) | 126 | Protein_934 | DUF1024 family protein | - |
| JKV48_RS04705 (JKV48_04680) | - | 967734..968264 (+) | 531 | WP_235103126.1 | dUTPase | - |
| JKV48_RS04710 (JKV48_04685) | - | 968301..968474 (+) | 174 | WP_001209219.1 | hypothetical protein | - |
| JKV48_RS04715 (JKV48_04690) | - | 968491..968679 (+) | 189 | WP_000195823.1 | DUF1381 domain-containing protein | - |
| JKV48_RS04720 (JKV48_04695) | - | 968654..968854 (+) | 201 | WP_001125015.1 | hypothetical protein | - |
| JKV48_RS04725 (JKV48_04700) | rinB | 968857..969009 (+) | 153 | WP_000237866.1 | transcriptional activator RinB | - |
| JKV48_RS04730 (JKV48_04705) | - | 969077..969277 (+) | 201 | WP_000265258.1 | DUF1514 family protein | - |
| JKV48_RS04735 (JKV48_04710) | - | 969329..969655 (+) | 327 | Protein_941 | hypothetical protein | - |
| JKV48_RS04740 (JKV48_04715) | - | 969655..970566 (+) | 912 | Protein_942 | SNF2-related protein | - |
| JKV48_RS04745 (JKV48_04720) | - | 970579..971016 (+) | 438 | WP_053507569.1 | transcriptional regulator | - |
| JKV48_RS04750 (JKV48_04725) | - | 971178..971492 (+) | 315 | WP_000196700.1 | HNH endonuclease | - |
| JKV48_RS04755 (JKV48_04730) | - | 971619..971924 (+) | 306 | WP_000778930.1 | P27 family phage terminase small subunit | - |
| JKV48_RS04760 (JKV48_04735) | - | 971914..973605 (+) | 1692 | WP_000153549.1 | terminase large subunit | - |
| JKV48_RS04765 (JKV48_04740) | - | 973610..974848 (+) | 1239 | WP_001100669.1 | phage portal protein | - |
| JKV48_RS04770 (JKV48_04745) | - | 974832..975605 (+) | 774 | WP_000061872.1 | head maturation protease, ClpP-related | - |
| JKV48_RS04775 (JKV48_04750) | - | 975617..976780 (+) | 1164 | WP_001142739.1 | phage major capsid protein | - |
| JKV48_RS04780 (JKV48_04755) | - | 976849..977127 (+) | 279 | WP_000050973.1 | head-tail connector protein | - |
| JKV48_RS04785 (JKV48_04760) | - | 977139..977471 (+) | 333 | WP_031838176.1 | phage protein | - |
| JKV48_RS04790 (JKV48_04765) | - | 977468..977869 (+) | 402 | WP_000110023.1 | hypothetical protein | - |
| JKV48_RS04795 (JKV48_04770) | - | 977870..978265 (+) | 396 | WP_001023806.1 | DUF3168 domain-containing protein | - |
| JKV48_RS04800 (JKV48_04775) | - | 978300..978941 (+) | 642 | WP_000807536.1 | major tail protein | - |
| JKV48_RS04805 (JKV48_04780) | - | 979033..979488 (+) | 456 | WP_000169128.1 | Ig-like domain-containing protein | - |
| JKV48_RS04810 (JKV48_04785) | gpG | 979546..979887 (+) | 342 | WP_000589166.1 | phage tail assembly chaperone G | - |
| JKV48_RS04815 (JKV48_04790) | - | 979938..980096 (+) | 159 | WP_000438833.1 | hypothetical protein | - |
| JKV48_RS04820 (JKV48_04795) | - | 980110..986310 (+) | 6201 | WP_031900279.1 | phage tail tape measure protein | - |
| JKV48_RS04825 (JKV48_04800) | - | 986310..987134 (+) | 825 | WP_001190533.1 | phage tail family protein | - |
| JKV48_RS04830 (JKV48_04805) | - | 987143..988726 (+) | 1584 | WP_000384462.1 | prophage endopeptidase tail family protein | - |
| JKV48_RS04835 (JKV48_04810) | - | 988726..989016 (+) | 291 | WP_000179860.1 | hypothetical protein | - |
| JKV48_RS04840 (JKV48_04815) | - | 989032..990942 (+) | 1911 | WP_000429551.1 | minor structural protein | - |
| JKV48_RS04845 (JKV48_04820) | - | 990942..992408 (+) | 1467 | WP_031900278.1 | BppU family phage baseplate upper protein | - |
| JKV48_RS04850 (JKV48_04825) | - | 992408..992797 (+) | 390 | WP_001166599.1 | DUF2977 domain-containing protein | - |
| JKV48_RS04855 (JKV48_04830) | - | 992790..992954 (+) | 165 | WP_000916020.1 | XkdX family protein | - |
| JKV48_RS04860 (JKV48_04835) | - | 993000..993299 (+) | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| JKV48_RS04865 (JKV48_04840) | - | 993435..993737 (+) | 303 | WP_000339141.1 | phage holin | - |
| JKV48_RS04870 (JKV48_04845) | - | 993748..995202 (+) | 1455 | WP_000909210.1 | N-acetylmuramoyl-L-alanine amidase | - |
| JKV48_RS04875 (JKV48_04850) | - | 995818..996654 (+) | 837 | WP_000675478.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=530347 JKV48_RS04665 WP_000934759.1 964321..964791(+) (ssbA) [Staphylococcus aureus strain NCCP11854]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=530347 JKV48_RS04665 WP_000934759.1 964321..964791(+) (ssbA) [Staphylococcus aureus strain NCCP11854]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |