Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LLUC047_RS09965 Genome accession   NZ_CP068658
Coordinates   1932015..1933097 (-) Length   360 a.a.
NCBI ID   WP_301004860.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC047     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1927015..1938097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC047_RS09930 (LLUC047_09685) atpF 1927477..1927983 (-) 507 WP_010906128.1 F0F1 ATP synthase subunit B -
  LLUC047_RS09935 (LLUC047_09690) atpB 1927998..1928711 (-) 714 WP_004255255.1 F0F1 ATP synthase subunit A -
  LLUC047_RS09940 (LLUC047_09695) - 1928758..1928973 (-) 216 WP_014572212.1 F0F1 ATP synthase subunit C -
  LLUC047_RS09945 (LLUC047_09700) - 1929156..1929932 (-) 777 WP_014572211.1 alpha/beta hydrolase family protein -
  LLUC047_RS09950 (LLUC047_09705) - 1930216..1930521 (-) 306 Protein_1937 ComEC/Rec2 family competence protein -
  LLUC047_RS09955 (LLUC047_09710) - 1930542..1931432 (-) 891 WP_262668373.1 IS982-like element ISLll1 family transposase -
  LLUC047_RS09960 (LLUC047_14225) comEC 1931509..1932018 (-) 510 WP_021215847.1 MBL fold metallo-hydrolase Machinery gene
  LLUC047_RS09965 (LLUC047_14230) comEC 1932015..1933097 (-) 1083 WP_301004860.1 ComEC/Rec2 family competence protein Machinery gene
  LLUC047_RS09970 (LLUC047_09720) - 1933414..1933827 (-) 414 Protein_1941 helix-hairpin-helix domain-containing protein -
  LLUC047_RS09975 (LLUC047_09725) - 1933918..1934808 (+) 891 WP_301004861.1 IS982-like element IS982B family transposase -
  LLUC047_RS09980 (LLUC047_09730) - 1935133..1936374 (-) 1242 WP_242521075.1 ABC transporter permease -
  LLUC047_RS09985 (LLUC047_14235) - 1936361..1936495 (-) 135 WP_260341359.1 hypothetical protein -
  LLUC047_RS09990 (LLUC047_09735) - 1936492..1937424 (-) 933 WP_021215850.1 ABC transporter ATP-binding protein -
  LLUC047_RS09995 (LLUC047_09740) - 1937530..1937928 (-) 399 WP_011676775.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41826.78 Da        Isoelectric Point: 9.9132

>NTDB_id=530267 LLUC047_RS09965 WP_301004860.1 1932015..1933097(-) (comEC) [Lactococcus cremoris strain UC047]
MKSLKEKGFYQNLSQNCQLSFTGNLEIPETQRNFNGFDDQKYLTSQNIYRQITIQQITNVEIKKNFDLHTLRRKAIVWTQ
NHFPKPMSDYMTGLLFGFLSKDFNQMSDIYSSLGIIHLFALSGMQVNFFIDWFRKILLRMGLTRERVNLVQIPFSIFYAF
MTGLSVSVLRALFQKNIRLTSLDNIAVTTLVLMLISPKFLLTTGGQLTLFYAFVISMLNHPFSNLNGLKKVLTESSVLSL
CVLPLLIFDFHIFQPLSILLTIIFGFLFDFMLLPLLLCCFLISFLGFSLNLNYIFQILEWLVYKVDLPLHYPFVLGKPSS
LELIILFVLIGLFVDSFSHKKRRFFLIGFIFLFFSSLKIQ

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=530267 LLUC047_RS09965 WP_301004860.1 1932015..1933097(-) (comEC) [Lactococcus cremoris strain UC047]
TTGAAAAGTCTAAAAGAGAAAGGGTTTTATCAGAACTTAAGTCAAAATTGTCAGTTAAGTTTCACAGGAAACCTTGAAAT
ACCAGAAACTCAGCGAAATTTTAATGGTTTTGATGACCAAAAATATTTAACTAGTCAAAATATCTATCGACAGATTACCA
TCCAACAAATTACAAATGTGGAAATAAAAAAGAATTTTGACCTTCATACTTTAAGGCGAAAGGCAATTGTTTGGACACAA
AATCATTTTCCAAAACCGATGAGTGACTATATGACAGGTTTGCTTTTTGGCTTTTTAAGTAAGGATTTTAATCAGATGAG
CGATATTTACAGCTCTTTAGGAATTATTCATCTTTTTGCTCTATCAGGAATGCAAGTAAATTTTTTTATTGATTGGTTTC
GTAAAATACTTCTTCGCATGGGACTGACGAGAGAAAGAGTGAATCTTGTTCAAATTCCATTTTCTATTTTTTATGCTTTT
ATGACGGGATTATCGGTTTCAGTTTTAAGAGCCCTTTTTCAAAAAAATATTCGTCTGACTTCTTTGGATAATATCGCAGT
TACGACATTAGTTTTGATGCTCATAAGTCCAAAATTTTTACTGACGACTGGTGGTCAGCTTACCTTGTTTTATGCTTTTG
TCATTTCGATGCTTAATCATCCTTTTTCTAATTTAAATGGATTGAAAAAAGTGCTGACAGAATCATCAGTCCTTTCACTT
TGTGTTCTTCCGTTACTCATCTTTGATTTCCATATTTTTCAGCCTCTTTCAATATTATTAACAATTATATTTGGTTTTCT
TTTTGATTTTATGTTGCTCCCGCTGCTTTTATGCTGTTTTCTTATATCATTTTTGGGATTTTCGCTCAATTTAAATTATA
TTTTTCAAATTCTAGAATGGCTAGTTTATAAAGTTGATTTACCCTTACATTACCCCTTTGTTTTGGGGAAACCTAGTTCA
CTCGAATTAATTATTCTATTTGTGTTAATTGGTTTATTCGTAGATTCATTTTCTCATAAAAAAAGGAGATTTTTTTTAAT
TGGATTTATATTTTTATTTTTTTCATCACTAAAAATCCAATGA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(94-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

97.175

98.333

0.956
  comEC/celB Streptococcus mitis SK321

48.318

90.833

0.439
  comEC/celB Streptococcus mitis NCTC 12261

47.706

90.833

0.433
  comEC/celB Streptococcus pneumoniae TIGR4

47.401

90.833

0.431
  comEC/celB Streptococcus pneumoniae Rx1

47.095

90.833

0.428
  comEC/celB Streptococcus pneumoniae D39

47.095

90.833

0.428
  comEC/celB Streptococcus pneumoniae R6

47.095

90.833

0.428