Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JMY44_RS02460 Genome accession   NZ_CP068591
Coordinates   540064..540600 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain EF7-18-58     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 535064..545600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMY44_RS02440 (JMY44_02440) aphA 535353..536066 (+) 714 WP_001315956.1 acid phosphatase AphA -
  JMY44_RS02445 (JMY44_02445) yjbQ 536177..536593 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JMY44_RS02450 (JMY44_02450) yjbR 536597..536953 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  JMY44_RS02455 (JMY44_02455) uvrA 536988..539810 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  JMY44_RS02460 (JMY44_02460) ssb 540064..540600 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JMY44_RS02465 (JMY44_02465) yjcB 540699..540980 (-) 282 WP_001295689.1 YjcB family protein -
  JMY44_RS02470 (JMY44_02470) pdeC 541410..542996 (+) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  JMY44_RS02475 (JMY44_02475) soxS 542999..543322 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  JMY44_RS02480 (JMY44_02480) soxR 543408..543872 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=529708 JMY44_RS02460 WP_000168305.1 540064..540600(+) (ssb) [Escherichia coli strain EF7-18-58]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=529708 JMY44_RS02460 WP_000168305.1 540064..540600(+) (ssb) [Escherichia coli strain EF7-18-58]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489