Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   JL476_RS07925 Genome accession   NZ_CP068586
Coordinates   1516889..1517200 (-) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain CC19CH076     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1511889..1522200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL476_RS07905 (JL476_07910) ctsE 1512756..1514318 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  JL476_RS07910 (JL476_07915) - 1514311..1514907 (-) 597 WP_002779313.1 CDC27 family protein -
  JL476_RS07915 (JL476_07920) ctsP 1514904..1515500 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  JL476_RS07920 (JL476_07925) ctsD 1515493..1516911 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  JL476_RS07925 (JL476_07930) ctsR 1516889..1517200 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  JL476_RS07930 (JL476_07935) nifJ 1517224..1520784 (-) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  JL476_RS07935 (JL476_07940) - 1520888..1520971 (-) 84 Protein_1554 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=529698 JL476_RS07925 WP_002779316.1 1516889..1517200(-) (ctsR) [Campylobacter coli strain CC19CH076]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=529698 JL476_RS07925 WP_002779316.1 1516889..1517200(-) (ctsR) [Campylobacter coli strain CC19CH076]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553