Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   JL476_RS07920 Genome accession   NZ_CP068586
Coordinates   1515493..1516911 (-) Length   472 a.a.
NCBI ID   WP_002779315.1    Uniprot ID   -
Organism   Campylobacter coli strain CC19CH076     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1510493..1521911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL476_RS07895 (JL476_07900) - 1510833..1511597 (+) 765 WP_002781157.1 TSUP family transporter -
  JL476_RS07900 (JL476_07905) ctsF 1511594..1512769 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  JL476_RS07905 (JL476_07910) ctsE 1512756..1514318 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  JL476_RS07910 (JL476_07915) - 1514311..1514907 (-) 597 WP_002779313.1 CDC27 family protein -
  JL476_RS07915 (JL476_07920) ctsP 1514904..1515500 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  JL476_RS07920 (JL476_07925) ctsD 1515493..1516911 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  JL476_RS07925 (JL476_07930) ctsR 1516889..1517200 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  JL476_RS07930 (JL476_07935) nifJ 1517224..1520784 (-) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  JL476_RS07935 (JL476_07940) - 1520888..1520971 (-) 84 Protein_1554 HAD family hydrolase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53513.05 Da        Isoelectric Point: 6.5150

>NTDB_id=529697 JL476_RS07920 WP_002779315.1 1515493..1516911(-) (ctsD) [Campylobacter coli strain CC19CH076]
MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELASYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIF
KLFIEEQDLAYKFDGKILKISALQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNF
NIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFIITPSIVDNTHIPSLRELGFKYNE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=529697 JL476_RS07920 WP_002779315.1 1515493..1516911(-) (ctsD) [Campylobacter coli strain CC19CH076]
ATGATAAGATTAATATTTATTAAAATTCTATTTTTTACCAATCTTATTTATGCCATGGAATGCCAAAAACGCTTATTTGA
TATAAATATCAATGAAGATCTAAGCATAGAAGAAAGTCTAAAAGAACTTGCTAGTTATTGCTCTTTTAGCGTGGTAATTA
AAGATACAATTGCTAAGGAAAAACTAAAAGCCATTCAAAGCAGTATCAATATCCACCAAATGAGTTTAGATGAAATTTTT
AAACTTTTTATAGAAGAACAGGACCTAGCTTATAAATTTGATGGCAAGATTTTAAAAATTTCTGCTTTGCAAACTAGAAT
TTTTAAAATCAACTATATTACTTCGGTAAGAGAAGGACAAAGCATAACCAAGGCTTCGGTGGATTCTAAGCCAAGGCAAA
GTGAGTATTATAGCGCTTTTGAAGATAATGAAGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATA
GAAAAAGAGATTATGATTTTGCTTAGCTCCTCACATGAAAACTATGATATAAAAGCACCTATAGTCAATCCAAATGCTGG
GCTTGTTATCGTTACTGGAACGCATTCTCAGCTTCAACGCGTAAAAGCTTATTTGCAAAAGCTTGAAAGTCGTCTTAAAA
AACAAGTTATTATAGATGTGAGTATACTTGCTGTAAATCTTAATAAAAATCATTCTAGTGGGATCAATTGGCAAAATTTC
AATATAGGATTAAATTCTCAAACGAGCGATAATACAAATTCTTTTATGCAAATACAAAATGGTCAAGGTTTTGTTAAAAA
TTTGGGTTTAAGAGCGAATTTGAATTTTGATTCCATTGTCAATTTTTTATCTCAAAGTGGAAAAACCAGTGTTTTATCTA
ATCCTAAATTAATGGCTTTAAACAATCAACAAGCCATTATTTCCATAGGCGATACTGTGAATTATCAAGTAAAAGAAAGC
TCTAAAGGTACTGAAAATGGCACAACTGTAAGTGAGAGTTATAGTAATTATTCTATTTTCATAGGAATTTTGCTTAATAT
TTTGCCCGAAATTTCTGATGATGGAAAAATCATGCTTAGGATCAATCCAAGTCTAAGCGACTTTAAATACCCAGAGGACA
ATAAAAGACAAAAAGAACCCCGCACTATCGCGCCTGATACAATTCAAAAAAAGCTTTCAAGTGTGGTGCAAGTAGAAAAT
AATCAAACTTTAATTTTGGGCGGACTTATCTCTCATAATCGCTCACAAAATGATAATTCTGTTAATTTTTTATCTAAAAT
TCCCATTTTGGGTTCTTTATTTAGAAGTGAAGATGAAAATTCCAATATCACAGAAATTGTTTTTATCATCACCCCAAGCA
TAGTAGACAATACACATATACCTAGTCTTAGGGAGTTAGGATTTAAATACAATGAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(283-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

80.72

100

0.807