Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   JL477_RS07405 Genome accession   NZ_CP068567
Coordinates   1425028..1425615 (-) Length   195 a.a.
NCBI ID   WP_052805861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CC19PF065     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1420028..1430615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL477_RS07385 (JL477_07385) - 1420776..1421540 (+) 765 WP_167843237.1 TIGR02757 family protein -
  JL477_RS07390 (JL477_07390) - 1421544..1422314 (+) 771 WP_002873601.1 TSUP family transporter -
  JL477_RS07395 (JL477_07395) ctsF 1422301..1423482 (-) 1182 WP_002873600.1 type II secretion system F family protein Machinery gene
  JL477_RS07400 (JL477_07400) ctsE 1423479..1425038 (-) 1560 WP_212147070.1 GspE/PulE family protein Machinery gene
  JL477_RS07405 (JL477_07405) ctsX 1425028..1425615 (-) 588 WP_052805861.1 hypothetical protein Machinery gene
  JL477_RS07410 (JL477_07410) ctsP 1425619..1426227 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  JL477_RS07415 (JL477_07415) ctsD 1426220..1427632 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  JL477_RS07420 (JL477_07420) ctsR 1427610..1427921 (-) 312 WP_002880445.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23327.37 Da        Isoelectric Point: 9.8409

>NTDB_id=529594 JL477_RS07405 WP_052805861.1 1425028..1425615(-) (ctsX) [Campylobacter jejuni strain CC19PF065]
MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLIELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=529594 JL477_RS07405 WP_052805861.1 1425028..1425615(-) (ctsX) [Campylobacter jejuni strain CC19PF065]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTGTTAGT
TATTTTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCACAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCTTTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATAGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

98.974

100

0.99