Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   JL477_RS07420 Genome accession   NZ_CP068567
Coordinates   1427610..1427921 (-) Length   103 a.a.
NCBI ID   WP_002880445.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CC19PF065     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1422610..1432921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL477_RS07400 (JL477_07400) ctsE 1423479..1425038 (-) 1560 WP_212147070.1 GspE/PulE family protein Machinery gene
  JL477_RS07405 (JL477_07405) ctsX 1425028..1425615 (-) 588 WP_052805861.1 hypothetical protein Machinery gene
  JL477_RS07410 (JL477_07410) ctsP 1425619..1426227 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  JL477_RS07415 (JL477_07415) ctsD 1426220..1427632 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  JL477_RS07420 (JL477_07420) ctsR 1427610..1427921 (-) 312 WP_002880445.1 hypothetical protein Machinery gene
  JL477_RS07425 (JL477_07425) nifJ 1427945..1431505 (-) 3561 WP_002880446.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  JL477_RS07430 (JL477_07430) - 1431598..1432239 (-) 642 WP_052817667.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12450.33 Da        Isoelectric Point: 5.7333

>NTDB_id=529597 JL477_RS07420 WP_002880445.1 1427610..1427921(-) (ctsR) [Campylobacter jejuni strain CC19PF065]
MCFSTLFAQDNFEEYFKLIDKENRIDFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=529597 JL477_RS07420 WP_002880445.1 1427610..1427921(-) (ctsR) [Campylobacter jejuni strain CC19PF065]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAGATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981