Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   K8B76_RS04765 Genome accession   NZ_CP082820
Coordinates   965414..966703 (+) Length   429 a.a.
NCBI ID   WP_000522345.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SCAID PHRX1-2021     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 960414..971703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B76_RS04755 (K8B76_04755) - 963798..964592 (+) 795 WP_000153016.1 Cof-type HAD-IIB family hydrolase -
  K8B76_RS04760 (K8B76_04760) - 964592..965410 (+) 819 WP_000763455.1 Cof-type HAD-IIB family hydrolase -
  K8B76_RS04765 (K8B76_04765) pilA 965414..966703 (+) 1290 WP_000522345.1 signal recognition particle-docking protein FtsY Machinery gene
  K8B76_RS04770 (K8B76_04770) zwf 966749..968236 (-) 1488 WP_000096145.1 glucose-6-phosphate dehydrogenase -
  K8B76_RS04775 (K8B76_04775) - 968385..969125 (-) 741 WP_001096313.1 amino acid ABC transporter ATP-binding protein -
  K8B76_RS04780 (K8B76_04780) - 969125..971290 (-) 2166 WP_000726252.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 47877.98 Da        Isoelectric Point: 4.1498

>NTDB_id=529593 K8B76_RS04765 WP_000522345.1 965414..966703(+) (pilA) [Streptococcus pneumoniae strain SCAID PHRX1-2021]
MGLFDRLFGKKEEPKIEEVVKEALENLDLSEYIDPTFTEVEEVSQEEAEVEIIEQAVFQEEEIQDTVEESLDSEPVVGVS
QEEVEEFPHSEELPEEEKLEHEGTVEESNSEVLEPEAPQTEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEE
LEELLIMSDVGVQVASNLTEELRYEAKLENAKKPDVLRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGVNGVGKTT
SIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQ
NKDNLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPV
KLIGFGEKIDDIGEFNSENFMKGLLEGLI

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=529593 K8B76_RS04765 WP_000522345.1 965414..966703(+) (pilA) [Streptococcus pneumoniae strain SCAID PHRX1-2021]
ATGGGATTATTTGACCGTCTATTCGGAAAAAAAGAAGAACCTAAAATCGAAGAAGTTGTAAAAGAAGCTCTGGAAAATCT
TGATTTGTCTGAATATATTGATCCTACCTTCACAGAAGTTGAGGAAGTTTCTCAAGAAGAAGCAGAGGTTGAAATTATTG
AACAAGCTGTGTTCCAAGAAGAGGAAATCCAAGACACAGTTGAAGAAAGTCTGGATTCAGAGCCAGTTGTAGGGGTTTCT
CAAGAAGAAGTCGAAGAATTTCCACACTCAGAAGAATTACCAGAGGAAGAGAAGCTTGAGCACGAAGGAACTGTAGAAGA
AAGTAATTCTGAAGTGCTTGAACCAGAAGCTCCTCAAACAGAAGAAACTGTTCAGGAAAAATATGACCGCAGTCTTAAGA
AAACTCGCACAGGTTTCGGTGCCCGCTTGAATGCCTTCTTTGCTAACTTCCGCTCTGTTGACGAAGAATTTTTCGAGGAA
CTGGAAGAACTGCTGATTATGAGTGATGTTGGTGTCCAAGTCGCTTCTAACTTAACGGAGGAACTACGTTACGAAGCCAA
GCTTGAAAATGCCAAGAAACCTGATGTACTTCGTCGTGTCATCATTGAGAAATTGGTTGAGCTTTATGAAAAGGATGGTA
GCTACGATGAAAGCATCCACTTCCAAGATAACTTGACAGTTATGCTCTTTGTTGGTGTGAATGGTGTTGGGAAAACAACT
TCTATCGGAAAACTAGCCCACCGCTACAAACAAGCTGGTAAGAAGGTCATGCTGGTTGCAGCAGATACCTTCCGTGCGGG
TGCAGTAGCTCAGCTAGCTGAATGGGGCCGACGAGTAGATGTTCCAGTAGTAACTGGACCTGAAAAAGCTGATCCAGCCA
GCGTGGTCTTTGATGGTATGGAACGTGCCGTGGCTGAAGGTATCGATATTCTCATGATTGATACTGCTGGTCGTCTGCAA
AATAAGGATAACCTTATGGCTGAGTTGGAAAAGATTGGTCGTATTATCAAACGTGTTGTGCCAGAAGCACCACATGAAAC
CTTCTTGGCACTTGATGCATCAACAGGTCAAAATGCCCTAGTACAGGCCAAAGAATTTTCGAAAATCACACCTTTAACCG
GAATTGTTTTGACTAAGATTGATGGAACTGCTCGAGGAGGTGTGGTTCTAGCCATTCGTGAAGAACTCAATATTCCTGTA
AAATTGATTGGTTTTGGTGAAAAAATCGATGATATTGGAGAGTTTAACTCAGAAAACTTTATGAAAGGTCTCTTGGAAGG
TTTAATCTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(226-425)

SRP54-type protein, helical bundle domain (SRP54_N)

(139-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

35.78

100

0.364