Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   JL477_RS07395 Genome accession   NZ_CP068567
Coordinates   1422301..1423482 (-) Length   393 a.a.
NCBI ID   WP_002873600.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CC19PF065     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1417301..1428482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL477_RS07365 (JL477_07365) - 1417843..1418184 (+) 342 WP_002784057.1 hypothetical protein -
  JL477_RS07370 (JL477_07370) flgM 1418247..1418444 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  JL477_RS07375 (JL477_07375) - 1418489..1418923 (+) 435 WP_002826016.1 flagellar protein FlgN -
  JL477_RS07380 (JL477_07380) flgK 1418933..1420759 (+) 1827 WP_002867029.1 flagellar hook-associated protein FlgK -
  JL477_RS07385 (JL477_07385) - 1420776..1421540 (+) 765 WP_167843237.1 TIGR02757 family protein -
  JL477_RS07390 (JL477_07390) - 1421544..1422314 (+) 771 WP_002873601.1 TSUP family transporter -
  JL477_RS07395 (JL477_07395) ctsF 1422301..1423482 (-) 1182 WP_002873600.1 type II secretion system F family protein Machinery gene
  JL477_RS07400 (JL477_07400) ctsE 1423479..1425038 (-) 1560 WP_212147070.1 GspE/PulE family protein Machinery gene
  JL477_RS07405 (JL477_07405) ctsX 1425028..1425615 (-) 588 WP_052805861.1 hypothetical protein Machinery gene
  JL477_RS07410 (JL477_07410) ctsP 1425619..1426227 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  JL477_RS07415 (JL477_07415) ctsD 1426220..1427632 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  JL477_RS07420 (JL477_07420) ctsR 1427610..1427921 (-) 312 WP_002880445.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45731.32 Da        Isoelectric Point: 8.8959

>NTDB_id=529592 JL477_RS07395 WP_002873600.1 1422301..1423482(-) (ctsF) [Campylobacter jejuni strain CC19PF065]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFD

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=529592 JL477_RS07395 WP_002873600.1 1422301..1423482(-) (ctsF) [Campylobacter jejuni strain CC19PF065]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCCTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGGAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTGACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987