Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IT777_RS23325 Genome accession   NZ_CP068444
Coordinates   4837049..4837573 (-) Length   174 a.a.
NCBI ID   WP_004151744.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain SWMUF35     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4832049..4842573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IT777_RS23290 (IT777_23295) - 4832526..4832807 (+) 282 WP_002885064.1 YjcB family protein -
  IT777_RS23295 (IT777_23300) - 4832854..4833102 (-) 249 Protein_4588 ABC transporter permease -
  IT777_RS23305 (IT777_23310) - 4833194..4833463 (+) 270 Protein_4589 inositol monophosphatase family protein -
  IT777_RS23310 (IT777_23315) iraM 4833491..4833844 (-) 354 WP_032454568.1 anti-adapter protein IraM -
  IT777_RS23315 (IT777_23320) - 4834114..4834977 (-) 864 WP_227692721.1 LysR family transcriptional regulator -
  IT777_RS23320 (IT777_23325) - 4835340..4836920 (+) 1581 WP_135732787.1 lytic transglycosylase F -
  IT777_RS23325 (IT777_23330) ssb 4837049..4837573 (-) 525 WP_004151744.1 single-stranded DNA-binding protein SSB1 Machinery gene
  IT777_RS23330 (IT777_23335) uvrA 4837828..4840653 (+) 2826 WP_023291635.1 excinuclease ABC subunit UvrA -
  IT777_RS23335 (IT777_23340) - 4840654..4841010 (-) 357 WP_023291634.1 MmcQ/YjbR family DNA-binding protein -
  IT777_RS23340 (IT777_23345) - 4841014..4841430 (-) 417 WP_004206303.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  IT777_RS23345 (IT777_23350) aphA 4841562..4842275 (-) 714 WP_023319487.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18711.70 Da        Isoelectric Point: 5.2358

>NTDB_id=529130 IT777_RS23325 WP_004151744.1 4837049..4837573(-) (ssb) [Klebsiella quasipneumoniae strain SWMUF35]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=529130 IT777_RS23325 WP_004151744.1 4837049..4837573(-) (ssb) [Klebsiella quasipneumoniae strain SWMUF35]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCAGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCTGGTGAGTACCTGCGTAAAGGCTCTCAGGTGTACATT
GAAGGCCAGCTGCGTACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACTGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGGCTCCGGCAGCGCCT
TCCAACGAACCGCCGATGGACTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.776
  ssb Glaesserella parasuis strain SC1401

59.239

100

0.626
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5