Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JK628_RS02595 Genome accession   NZ_CP068437
Coordinates   600619..601308 (+) Length   229 a.a.
NCBI ID   WP_202287722.1    Uniprot ID   -
Organism   Shewanella sp. KX20019     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 595619..606308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JK628_RS02580 (JK628_02580) - 595789..596094 (-) 306 WP_237524120.1 hypothetical protein -
  JK628_RS02585 (JK628_02585) uvrA 596113..598953 (-) 2841 WP_202287720.1 excinuclease ABC subunit UvrA -
  JK628_RS02590 (JK628_02590) - 599219..600586 (+) 1368 WP_202287721.1 MFS transporter -
  JK628_RS02595 (JK628_02595) ssb 600619..601308 (+) 690 WP_202287722.1 single-stranded DNA-binding protein Machinery gene
  JK628_RS02600 (JK628_02600) - 601611..602618 (+) 1008 WP_202287723.1 LysR family transcriptional regulator -
  JK628_RS02605 (JK628_02605) - 602685..604973 (-) 2289 WP_202287724.1 OmcA/MtrC family decaheme c-type cytochrome -
  JK628_RS02610 (JK628_02610) - 605267..606247 (-) 981 WP_202287725.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24661.16 Da        Isoelectric Point: 8.2483

>NTDB_id=529058 JK628_RS02595 WP_202287722.1 600619..601308(+) (ssb) [Shewanella sp. KX20019]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQSGQKQERTEWHRVVMFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVVDQGGQMQMLGGRGQGQGAPAQGGYQQPQQAPQQGGYAPKPQQAAPQQGGYAPKPQAA
PAQGGYQQPQQSAPQQGGYQQPQQAAPAQGGYAPKPQAAPAAPQQRPAPQPQQNVTPDLDDGWDDDIPF

Nucleotide


Download         Length: 690 bp        

>NTDB_id=529058 JK628_RS02595 WP_202287722.1 600619..601308(+) (ssb) [Shewanella sp. KX20019]
ATGGCCAGTCGTGGTGTCAATAAAGTAATTTTGGTAGGTAATTTAGGACAAGATCCTGAAGTTCGTTACATGCCGAACGG
CAATGCCGTAGCCAACATTACCGTGGCGACAAGTGAATCTTGGAAAGACCAAAGTGGTCAAAAGCAAGAGCGCACAGAAT
GGCACCGCGTAGTGATGTTTGGCAAGCTGGCTGAAATCACAGGTGAATACTTGCGTAAAGGCTCTCAAGTTTACCTTGAA
GGCAAGCTGCAGACACGTAAGTGGAAAGACCAAAGCGGTCAAGATCGTTACAGCACTGAAGTTGTTGTCGATCAAGGCGG
TCAAATGCAAATGTTAGGTGGCCGTGGTCAAGGTCAAGGCGCACCAGCACAAGGTGGCTACCAGCAGCCACAACAAGCAC
CGCAACAGGGTGGCTATGCACCTAAGCCACAGCAAGCGGCTCCTCAGCAAGGTGGTTATGCACCTAAGCCTCAGGCAGCT
CCTGCACAGGGCGGTTACCAGCAGCCACAACAGTCAGCTCCACAGCAAGGTGGTTATCAGCAACCACAGCAAGCAGCACC
CGCTCAAGGTGGTTATGCACCTAAGCCTCAGGCTGCACCAGCTGCTCCTCAGCAGCGTCCAGCTCCGCAGCCACAGCAGA
ATGTGACTCCAGATTTGGATGATGGCTGGGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.477

76.856

0.511
  ssb Neisseria meningitidis MC58

42.291

99.127

0.419
  ssb Neisseria gonorrhoeae MS11

42.291

99.127

0.419
  ssb Glaesserella parasuis strain SC1401

55.488

71.616

0.397