Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JJQ59_RS02125 Genome accession   NZ_CP068434
Coordinates   435050..435607 (+) Length   185 a.a.
NCBI ID   WP_114132144.1    Uniprot ID   A0A367PKY3
Organism   Cupriavidus necator strain C39.     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 430050..440607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJQ59_RS02115 (JJQ59_02115) uvrA 430384..433248 (-) 2865 WP_114132146.1 excinuclease ABC subunit UvrA -
  JJQ59_RS02120 (JJQ59_02120) - 433616..434866 (+) 1251 WP_114132145.1 MFS transporter -
  JJQ59_RS02125 (JJQ59_02125) ssb 435050..435607 (+) 558 WP_114132144.1 single-stranded DNA-binding protein Machinery gene
  JJQ59_RS02130 (JJQ59_02130) - 435661..436986 (-) 1326 WP_202281486.1 IS4 family transposase -
  JJQ59_RS02135 (JJQ59_02135) - 437387..438595 (+) 1209 WP_114131537.1 tyrosine-type recombinase/integrase -
  JJQ59_RS02140 (JJQ59_02140) - 438582..440222 (+) 1641 WP_114131538.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19107.78 Da        Isoelectric Point: 5.9517

>NTDB_id=529039 JJQ59_RS02125 WP_114132144.1 435050..435607(+) (ssb) [Cupriavidus necator strain C39.]
MASVNKVILVGNLGADPETRYLPSGDAVTNIRLATTDRYKDKQSGEMKEATEWHRVSFFGKIAEIAGQYLRKGSSVYIEG
RIRTRKWQDQSGQDKYSTEIVADQMQMLGSRQGGGGGGGDEGGYGGGAGGGGGYSREASGGGGYGGGARGGQGGAQGGGQ
SGGAARRPQQPASNGFEDMDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=529039 JJQ59_RS02125 WP_114132144.1 435050..435607(+) (ssb) [Cupriavidus necator strain C39.]
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGCAACCTCGGCGCAGACCCGGAAACCCGCTACCTGCCCAGCGGCGACGC
CGTGACCAATATCCGCCTGGCGACCACCGATCGCTACAAGGACAAGCAGAGCGGCGAGATGAAGGAGGCCACCGAATGGC
ACCGCGTCTCGTTCTTCGGCAAGATCGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGATCGTCGGTCTATATCGAAGGC
CGCATCCGCACCCGCAAGTGGCAGGACCAGTCGGGCCAGGACAAGTACTCCACTGAAATCGTTGCCGACCAGATGCAGAT
GCTGGGTTCGCGCCAGGGTGGCGGCGGCGGTGGCGGTGACGAAGGCGGCTACGGTGGCGGCGCAGGCGGCGGCGGTGGCT
ACAGCCGCGAAGCGTCGGGCGGCGGCGGCTACGGCGGTGGCGCCCGCGGCGGCCAGGGCGGTGCCCAGGGTGGCGGCCAG
AGCGGTGGCGCGGCACGCCGGCCGCAGCAGCCGGCCTCGAATGGTTTCGAGGATATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A367PKY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.262

100

0.519
  ssb Glaesserella parasuis strain SC1401

49.738

100

0.514
  ssb Neisseria meningitidis MC58

45.109

99.459

0.449
  ssb Neisseria gonorrhoeae MS11

44.565

99.459

0.443