Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JHW28_RS27840 Genome accession   NZ_CP068390
Coordinates   6198091..6198603 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain YS21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6193091..6203603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW28_RS27815 (JHW28_27815) - 6193184..6194179 (+) 996 WP_202338983.1 lysylphosphatidylglycerol synthase domain-containing protein -
  JHW28_RS27820 (JHW28_27820) - 6194251..6195006 (-) 756 WP_038575407.1 alpha/beta hydrolase family protein -
  JHW28_RS27825 (JHW28_27825) - 6194996..6196105 (-) 1110 WP_124309675.1 DUF3182 family protein -
  JHW28_RS27830 (JHW28_27830) - 6196286..6197293 (-) 1008 WP_124309676.1 GlxA family transcriptional regulator -
  JHW28_RS27835 (JHW28_27835) - 6197397..6197951 (+) 555 WP_096375573.1 cysteine hydrolase family protein -
  JHW28_RS27840 (JHW28_27840) ssb 6198091..6198603 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  JHW28_RS27845 (JHW28_27845) - 6198613..6200007 (-) 1395 WP_038575385.1 MFS transporter -
  JHW28_RS27850 (JHW28_27850) uvrA 6200188..6203022 (+) 2835 WP_081359606.1 excinuclease ABC subunit UvrA -
  JHW28_RS27855 (JHW28_27855) bfr 6203116..6203580 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=528884 JHW28_RS27840 WP_009045846.1 6198091..6198603(-) (ssb) [Pseudomonas chlororaphis subsp. aurantiaca strain YS21]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=528884 JHW28_RS27840 WP_009045846.1 6198091..6198603(-) (ssb) [Pseudomonas chlororaphis subsp. aurantiaca strain YS21]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAGCGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5