Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   JKL50_RS00835 Genome accession   NZ_CP068389
Coordinates   144252..144545 (+) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain ws31     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 139252..149545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKL50_RS00805 (JKL50_00805) - 139756..139998 (-) 243 WP_003217440.1 DUF2626 domain-containing protein -
  JKL50_RS00810 (JKL50_00810) - 140211..140591 (+) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  JKL50_RS00820 (JKL50_00820) - 140817..141686 (+) 870 WP_007501231.1 STAS domain-containing protein -
  JKL50_RS00825 (JKL50_00825) comGA 142144..143214 (+) 1071 WP_144668081.1 competence type IV pilus ATPase ComGA Machinery gene
  JKL50_RS00830 (JKL50_00830) comGB 143195..144235 (+) 1041 WP_035390815.1 competence type IV pilus assembly protein ComGB -
  JKL50_RS00835 (JKL50_00835) comGC 144252..144545 (+) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  JKL50_RS00840 (JKL50_00840) comGD 144538..144984 (+) 447 WP_202734345.1 competence type IV pilus minor pilin ComGD -
  JKL50_RS19410 - 145004..145282 (+) 279 WP_255234198.1 type II secretion system protein -
  JKL50_RS00845 (JKL50_00845) comGF 145224..145721 (+) 498 WP_046343974.1 competence type IV pilus minor pilin ComGF -
  JKL50_RS00850 (JKL50_00850) - 145718..146101 (+) 384 WP_046343972.1 competence type IV pilus minor pilin ComGG -
  JKL50_RS00855 (JKL50_00855) - 146162..146356 (+) 195 WP_008342191.1 YqzE family protein -
  JKL50_RS00860 (JKL50_00860) - 146391..146717 (-) 327 WP_039166025.1 DUF3889 domain-containing protein -
  JKL50_RS00865 (JKL50_00865) tapA 146970..147497 (+) 528 WP_046527018.1 amyloid fiber anchoring/assembly protein TapA -
  JKL50_RS00870 (JKL50_00870) sipW 147547..148119 (+) 573 WP_041091749.1 signal peptidase I SipW -
  JKL50_RS00875 (JKL50_00875) tasA 148178..148978 (+) 801 WP_035390805.1 biofilm matrix protein TasA -
  JKL50_RS00880 (JKL50_00880) sinR 149046..149381 (-) 336 WP_017357978.1 transcriptional regulator SinR Regulator

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=528809 JKL50_RS00835 WP_008342186.1 144252..144545(+) (comGC) [Bacillus altitudinis strain ws31]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=528809 JKL50_RS00835 WP_008342186.1 144252..144545(+) (comGC) [Bacillus altitudinis strain ws31]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCGAATGGAAAGGCAATTTTCATTCAAAACGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392