Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   JKL50_RS00880 Genome accession   NZ_CP068389
Coordinates   149046..149381 (-) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain ws31     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 144046..154381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKL50_RS00835 (JKL50_00835) comGC 144252..144545 (+) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  JKL50_RS00840 (JKL50_00840) comGD 144538..144984 (+) 447 WP_202734345.1 competence type IV pilus minor pilin ComGD -
  JKL50_RS19410 - 145004..145282 (+) 279 WP_255234198.1 type II secretion system protein -
  JKL50_RS00845 (JKL50_00845) comGF 145224..145721 (+) 498 WP_046343974.1 competence type IV pilus minor pilin ComGF -
  JKL50_RS00850 (JKL50_00850) - 145718..146101 (+) 384 WP_046343972.1 competence type IV pilus minor pilin ComGG -
  JKL50_RS00855 (JKL50_00855) - 146162..146356 (+) 195 WP_008342191.1 YqzE family protein -
  JKL50_RS00860 (JKL50_00860) - 146391..146717 (-) 327 WP_039166025.1 DUF3889 domain-containing protein -
  JKL50_RS00865 (JKL50_00865) tapA 146970..147497 (+) 528 WP_046527018.1 amyloid fiber anchoring/assembly protein TapA -
  JKL50_RS00870 (JKL50_00870) sipW 147547..148119 (+) 573 WP_041091749.1 signal peptidase I SipW -
  JKL50_RS00875 (JKL50_00875) tasA 148178..148978 (+) 801 WP_035390805.1 biofilm matrix protein TasA -
  JKL50_RS00880 (JKL50_00880) sinR 149046..149381 (-) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  JKL50_RS00885 (JKL50_00885) - 149415..149579 (-) 165 WP_008342197.1 anti-repressor SinI family protein -
  JKL50_RS00890 (JKL50_00890) - 149764..150561 (-) 798 WP_017367588.1 YqhG family protein -
  JKL50_RS00895 (JKL50_00895) - 150576..152246 (-) 1671 WP_144610269.1 DEAD/DEAH box helicase -
  JKL50_RS00900 (JKL50_00900) gcvT 152806..153903 (+) 1098 WP_165378915.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=528810 JKL50_RS00880 WP_017357978.1 149046..149381(-) (sinR) [Bacillus altitudinis strain ws31]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=528810 JKL50_RS00880 WP_017357978.1 149046..149381(-) (sinR) [Bacillus altitudinis strain ws31]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928