Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JI728_RS03670 Genome accession   NZ_CP068386
Coordinates   760225..760755 (+) Length   176 a.a.
NCBI ID   WP_000168322.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica serovar Gallinarum/Pullorum strain R51     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 755225..765755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JI728_RS03645 (JI728_03640) - 755464..755880 (+) 417 WP_000270389.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JI728_RS03650 (JI728_03645) - 755883..756239 (+) 357 WP_000155666.1 MmcQ/YjbR family DNA-binding protein -
  JI728_RS03655 (JI728_03650) - 756240..756578 (-) 339 WP_000146599.1 membrane protein -
  JI728_RS03660 (JI728_03655) - 756565..757020 (-) 456 WP_079787002.1 hypothetical protein -
  JI728_RS03665 (JI728_03660) uvrA 757152..759977 (-) 2826 WP_000357728.1 excinuclease ABC subunit UvrA -
  JI728_RS03670 (JI728_03665) ssb 760225..760755 (+) 531 WP_000168322.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JI728_RS03675 (JI728_03670) siiA 761796..762428 (+) 633 WP_000389238.1 SPI-4 type I secretion system auxiliary protein SiiA -
  JI728_RS03680 (JI728_03675) - 762425..763813 (+) 1389 WP_000875190.1 MotA/TolQ/ExbB proton channel family protein -
  JI728_RS03685 (JI728_03680) siiC 763803..765122 (+) 1320 WP_001746915.1 SPI-4 type I secretion system protein SiiC -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19074.15 Da        Isoelectric Point: 5.2456

>NTDB_id=528787 JI728_RS03670 WP_000168322.1 760225..760755(+) (ssb) [Salmonella enterica subsp. enterica serovar Gallinarum/Pullorum strain R51]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=528787 JI728_RS03670 WP_000168322.1 760225..760755(+) (ssb) [Salmonella enterica subsp. enterica serovar Gallinarum/Pullorum strain R51]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGGGTGGTGATGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAATTGCGTACCCGCAAGTGGACCGATCAGAGTGGCCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGCGGCGTGATGCAGATGCTGGGTGGTCGCCAGGGCGGCGGCGCGCCGGCAGGCGGTCAGCAGCAGGGGGGTTGGGGTC
AGCCACAACAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.978

100

0.744
  ssb Glaesserella parasuis strain SC1401

60.109

100

0.625
  ssb Neisseria gonorrhoeae MS11

46.448

100

0.483
  ssb Neisseria meningitidis MC58

46.409

100

0.477