Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JJW05_RS03705 Genome accession   NZ_CP068279
Coordinates   787488..788024 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain CY708     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 782488..793024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJW05_RS03685 (JJW05_03655) aphA 782777..783490 (+) 714 WP_001226928.1 acid phosphatase AphA -
  JJW05_RS03690 (JJW05_03660) yjbQ 783601..784017 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JJW05_RS03695 (JJW05_03665) yjbR 784021..784377 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  JJW05_RS03700 (JJW05_03670) uvrA 784412..787234 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  JJW05_RS03705 (JJW05_03675) ssb 787488..788024 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JJW05_RS03710 (JJW05_03680) yjcB 788123..788404 (-) 282 WP_001295689.1 YjcB family protein -
  JJW05_RS03715 (JJW05_03685) pdeC 788834..790420 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  JJW05_RS03720 (JJW05_03690) soxS 790423..790746 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  JJW05_RS03725 (JJW05_03695) soxR 790832..791296 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=528662 JJW05_RS03705 WP_000168305.1 787488..788024(+) (ssb) [Escherichia coli strain CY708]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=528662 JJW05_RS03705 WP_000168305.1 787488..788024(+) (ssb) [Escherichia coli strain CY708]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489