Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABCA12_RS01000 Genome accession   NZ_CP068253
Coordinates   217826..218410 (+) Length   194 a.a.
NCBI ID   WP_004909838.1    Uniprot ID   A0A8I0V5Q1
Organism   Acinetobacter junii strain CAM121     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 212826..223410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCA12_RS00980 (ABCA12_0196) - 213833..214186 (+) 354 WP_004951378.1 DUF1304 domain-containing protein -
  ABCA12_RS00985 (ABCA12_0197) tenA 214341..215015 (-) 675 WP_151790393.1 thiaminase II -
  ABCA12_RS00990 (ABCA12_0198) - 215190..216272 (+) 1083 WP_151974419.1 DUF475 domain-containing protein -
  ABCA12_RS00995 (ABCA12_0199) - 216409..217773 (+) 1365 WP_005403380.1 MFS transporter -
  ABCA12_RS01000 (ABCA12_0200) ssb 217826..218410 (+) 585 WP_004909838.1 single-stranded DNA-binding protein Machinery gene
  ABCA12_RS01005 (ABCA12_0201) - 218918..220360 (+) 1443 WP_151834297.1 amino acid permease -
  ABCA12_RS01010 (ABCA12_0202) - 220432..221931 (-) 1500 WP_151974421.1 PLP-dependent aminotransferase family protein -
  ABCA12_RS01015 (ABCA12_0203) gabT 222086..223378 (+) 1293 WP_004951385.1 4-aminobutyrate--2-oxoglutarate transaminase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21241.96 Da        Isoelectric Point: 6.7308

>NTDB_id=528619 ABCA12_RS01000 WP_004909838.1 217826..218410(+) (ssb) [Acinetobacter junii strain CAM121]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQGGEHQAGNDFNQPRFNNNQGGGYQNTGYNNNQNGYGQGGGFGGGNQG
NYAGSPQAGNGFNTPKAAPQPAAAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=528619 ABCA12_RS01000 WP_004909838.1 217826..218410(+) (ssb) [Acinetobacter junii strain CAM121]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCTGAGACAAAAACCTTTCCAAATGGTGGATC
ACTGACCCAATTTTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGAAAAGAACAAACAGAATGGC
ATCGTATCGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATACTTACGTAAAGGTTCAAAAGTTTATATCGAAGGT
TCATTGCGTACGCGCCAATGGACAGACCAAAATGGTCAAGAGCGTTACAGCACCGAAATTCGTGGTGACCAAATGCAAAT
GCTCGATTCTCGTCAGCAAGGTGGTGAGCATCAAGCGGGTAATGATTTTAACCAACCGCGTTTTAACAACAATCAAGGCG
GTGGCTACCAAAACACAGGCTATAACAACAACCAAAATGGTTATGGTCAAGGTGGCGGTTTTGGTGGTGGAAATCAGGGC
AATTATGCAGGCAGTCCGCAAGCAGGTAATGGTTTTAATACACCAAAAGCCGCACCTCAACCTGCTGCTGCTCCAGCTGA
CTTAGATGATGATTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.67

100

0.454
  ssb Neisseria gonorrhoeae MS11

39.583

98.969

0.392
  ssb Neisseria meningitidis MC58

39.583

98.969

0.392