Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K8B93_RS18410 Genome accession   NZ_CP082772
Coordinates   3821648..3822385 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O2:H1 strain HM670     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3816648..3827385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B93_RS18395 (K8B93_18295) clpC 3817102..3819675 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  K8B93_RS18400 (K8B93_18300) yfiH 3819805..3820536 (-) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  K8B93_RS18405 (K8B93_18305) rluD 3820533..3821513 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K8B93_RS18410 (K8B93_18310) comL 3821648..3822385 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  K8B93_RS18415 (K8B93_18315) raiA 3822655..3822996 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  K8B93_RS18420 (K8B93_18320) pheL 3823100..3823147 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  K8B93_RS18425 (K8B93_18325) pheA 3823246..3824406 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  K8B93_RS18430 (K8B93_18330) tyrA 3824449..3825570 (-) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  K8B93_RS18435 (K8B93_18335) aroF 3825581..3826651 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  K8B93_RS18440 (K8B93_18340) yfiL 3826861..3827226 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=528619 K8B93_RS18410 WP_000197686.1 3821648..3822385(+) (comL) [Escherichia coli O2:H1 strain HM670]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=528619 K8B93_RS18410 WP_000197686.1 3821648..3822385(+) (comL) [Escherichia coli O2:H1 strain HM670]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376