Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JG554_RS12700 Genome accession   NZ_CP068241
Coordinates   2622273..2622782 (-) Length   169 a.a.
NCBI ID   WP_046207091.1    Uniprot ID   A0A9Q2QKP8
Organism   Staphylococcus sp. 11-B-312     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2617273..2627782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG554_RS12665 (JG554_12665) - 2617997..2618137 (-) 141 WP_019469856.1 hypothetical protein -
  JG554_RS12670 (JG554_12670) - 2618134..2618301 (-) 168 WP_019469855.1 hypothetical protein -
  JG554_RS12675 (JG554_12675) - 2618447..2618659 (-) 213 WP_238394775.1 hypothetical protein -
  JG554_RS12680 (JG554_12680) - 2618965..2619510 (-) 546 WP_107359921.1 hypothetical protein -
  JG554_RS12685 (JG554_12685) - 2619788..2620003 (+) 216 WP_107359922.1 hypothetical protein -
  JG554_RS12690 (JG554_12690) - 2621478..2621722 (+) 245 Protein_2472 hypothetical protein -
  JG554_RS12695 (JG554_12695) rpsR 2621981..2622223 (-) 243 WP_042737618.1 30S ribosomal protein S18 -
  JG554_RS12700 (JG554_12700) ssbA 2622273..2622782 (-) 510 WP_046207091.1 single-stranded DNA-binding protein Machinery gene
  JG554_RS12705 (JG554_12705) rpsF 2622801..2623106 (-) 306 WP_019469843.1 30S ribosomal protein S6 -
  JG554_RS12710 (JG554_12710) - 2623498..2624295 (+) 798 WP_064209658.1 GH25 family lysozyme -
  JG554_RS12715 (JG554_12715) ychF 2624582..2625679 (-) 1098 WP_046207093.1 redox-regulated ATPase YchF -
  JG554_RS12720 (JG554_12720) - 2625693..2625896 (-) 204 WP_046207094.1 DUF951 domain-containing protein -
  JG554_RS12725 (JG554_12725) - 2625917..2626801 (-) 885 WP_046207095.1 mechanosensitive ion channel family protein -
  JG554_RS12730 (JG554_12730) - 2627210..2627578 (-) 369 WP_046207547.1 DUF2294 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18885.46 Da        Isoelectric Point: 4.9163

>NTDB_id=528504 JG554_RS12700 WP_046207091.1 2622273..2622782(-) (ssbA) [Staphylococcus sp. 11-B-312]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHAQEGNNNFQNFGGQQSGQNTSSYQNNNNNNPSNNNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=528504 JG554_RS12700 WP_046207091.1 2622273..2622782(-) (ssbA) [Staphylococcus sp. 11-B-312]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCTGATTTTATTAACTGCGTTGTTT
TTAGAAAACAAGCAGAAAATGTAAATAACTACTTATTCAAAGGTAGTCTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTACGAAAACCAAGAAGGTCGTCGTATATTTGTAACTGAAGTTGTCTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
CCAAAATCAGCGTCATGCTCAAGAAGGAAATAATAATTTCCAAAATTTTGGTGGACAACAATCCGGACAAAATACGTCTT
CTTATCAAAACAATAACAACAATAATCCATCAAACAATAATCAATCAGATAACCCATTTGCAAATGCAAACGGCCCTATT
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.791

100

0.639
  ssb Latilactobacillus sakei subsp. sakei 23K

57.803

100

0.592
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

62.722

0.385
  ssb Glaesserella parasuis strain SC1401

32.447

100

0.361