Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JJQ57_RS29575 Genome accession   NZ_CP068239
Coordinates   6255114..6255611 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain PA19-3047     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6250114..6260611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJQ57_RS29555 (JJQ57_29555) pchD 6250898..6252541 (+) 1644 WP_003093650.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  JJQ57_RS29560 (JJQ57_29560) pchC 6252538..6253293 (+) 756 WP_003093651.1 pyochelin biosynthesis editing thioesterase PchC -
  JJQ57_RS29565 (JJQ57_29565) pchB 6253293..6253598 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  JJQ57_RS29570 (JJQ57_29570) pchA 6253595..6255025 (+) 1431 WP_003093658.1 isochorismate synthase PchA -
  JJQ57_RS29575 (JJQ57_29575) ssb 6255114..6255611 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  JJQ57_RS29580 (JJQ57_29580) - 6255628..6257016 (-) 1389 WP_003103910.1 MFS transporter -
  JJQ57_RS29585 (JJQ57_29585) uvrA 6257230..6260067 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA -
  JJQ57_RS29590 (JJQ57_29590) bfr 6260139..6260603 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=528464 JJQ57_RS29575 WP_003114685.1 6255114..6255611(-) (ssb) [Pseudomonas aeruginosa strain PA19-3047]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=528464 JJQ57_RS29575 WP_003114685.1 6255114..6255611(-) (ssb) [Pseudomonas aeruginosa strain PA19-3047]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515