Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JJQ57_RS22725 | Genome accession | NZ_CP068239 |
| Coordinates | 4788182..4788643 (+) | Length | 153 a.a. |
| NCBI ID | WP_023127335.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain PA19-3047 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4740247..4797478 | 4788182..4788643 | within | 0 |
Gene organization within MGE regions
Location: 4740247..4797478
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJQ57_RS22400 (JJQ57_22400) | wapB | 4740247..4741239 (-) | 993 | WP_073660296.1 | 1,2-glucosyltransferase WapB | - |
| JJQ57_RS22405 (JJQ57_22405) | - | 4741782..4742045 (-) | 264 | WP_023098716.1 | hypothetical protein | - |
| JJQ57_RS22410 (JJQ57_22410) | - | 4742081..4742344 (-) | 264 | WP_023098717.1 | hypothetical protein | - |
| JJQ57_RS22415 (JJQ57_22415) | - | 4742341..4742709 (-) | 369 | WP_023098718.1 | hypothetical protein | - |
| JJQ57_RS22420 (JJQ57_22420) | - | 4742706..4743335 (-) | 630 | WP_023098719.1 | glycoside hydrolase family 19 protein | - |
| JJQ57_RS22425 (JJQ57_22425) | - | 4743400..4745457 (-) | 2058 | WP_071537765.1 | structural protein | - |
| JJQ57_RS22430 (JJQ57_22430) | - | 4745516..4748239 (-) | 2724 | WP_023098721.1 | host specificity factor TipJ family phage tail protein | - |
| JJQ57_RS22435 (JJQ57_22435) | - | 4748211..4748618 (-) | 408 | WP_014603776.1 | hypothetical protein | - |
| JJQ57_RS22440 (JJQ57_22440) | - | 4748623..4749114 (-) | 492 | WP_023098722.1 | DUF1833 family protein | - |
| JJQ57_RS22445 (JJQ57_22445) | - | 4749098..4749577 (-) | 480 | WP_033936236.1 | hypothetical protein | - |
| JJQ57_RS22450 (JJQ57_22450) | - | 4749574..4752024 (-) | 2451 | WP_033936239.1 | phage tail length tape measure family protein | - |
| JJQ57_RS22455 (JJQ57_22455) | - | 4752351..4752710 (-) | 360 | WP_033936240.1 | phage tail assembly chaperone family protein, TAC | - |
| JJQ57_RS22460 (JJQ57_22460) | - | 4752720..4753241 (-) | 522 | WP_033936241.1 | phage tail tube protein | - |
| JJQ57_RS22465 (JJQ57_22465) | - | 4753316..4753681 (-) | 366 | WP_003101017.1 | DUF3168 domain-containing protein | - |
| JJQ57_RS22470 (JJQ57_22470) | - | 4753681..4754163 (-) | 483 | WP_003101018.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| JJQ57_RS22475 (JJQ57_22475) | - | 4754156..4754773 (-) | 618 | WP_023098728.1 | methyltransferase domain-containing protein | - |
| JJQ57_RS22480 (JJQ57_22480) | - | 4754770..4754955 (-) | 186 | WP_015648614.1 | hypothetical protein | - |
| JJQ57_RS22485 (JJQ57_22485) | - | 4754952..4755785 (-) | 834 | WP_015648613.1 | hypothetical protein | - |
| JJQ57_RS22490 (JJQ57_22490) | - | 4755789..4756151 (-) | 363 | WP_015648612.1 | Gp49 family protein | - |
| JJQ57_RS22495 (JJQ57_22495) | - | 4756213..4756785 (-) | 573 | WP_023098729.1 | GIY-YIG nuclease family protein | - |
| JJQ57_RS22500 (JJQ57_22500) | - | 4756904..4757260 (-) | 357 | WP_031630036.1 | phage head closure protein | - |
| JJQ57_RS22505 (JJQ57_22505) | - | 4757261..4757581 (-) | 321 | WP_012614021.1 | head-tail connector protein | - |
| JJQ57_RS22510 (JJQ57_22510) | - | 4757562..4757966 (-) | 405 | WP_169309829.1 | hypothetical protein | - |
| JJQ57_RS22515 (JJQ57_22515) | - | 4758325..4759512 (-) | 1188 | WP_023098730.1 | phage major capsid protein | - |
| JJQ57_RS22520 (JJQ57_22520) | - | 4759509..4760399 (-) | 891 | WP_023098731.1 | head maturation protease, ClpP-related | - |
| JJQ57_RS22525 (JJQ57_22525) | - | 4760403..4761707 (-) | 1305 | WP_031630043.1 | phage portal protein | - |
| JJQ57_RS22530 (JJQ57_22530) | - | 4761700..4761864 (-) | 165 | WP_003088450.1 | hypothetical protein | - |
| JJQ57_RS22535 (JJQ57_22535) | - | 4761861..4763552 (-) | 1692 | WP_023098733.1 | terminase large subunit | - |
| JJQ57_RS22540 (JJQ57_22540) | - | 4763554..4763934 (-) | 381 | WP_023098734.1 | hypothetical protein | - |
| JJQ57_RS22545 (JJQ57_22545) | - | 4764147..4764461 (-) | 315 | WP_033936245.1 | HNH endonuclease | - |
| JJQ57_RS22550 (JJQ57_22550) | - | 4764962..4765180 (-) | 219 | WP_033936247.1 | hypothetical protein | - |
| JJQ57_RS22555 (JJQ57_22555) | - | 4765549..4765833 (-) | 285 | WP_033936248.1 | phage holin family protein | - |
| JJQ57_RS22560 (JJQ57_22560) | - | 4765826..4766194 (-) | 369 | WP_033936249.1 | putative holin | - |
| JJQ57_RS22575 (JJQ57_22575) | - | 4766550..4767773 (+) | 1224 | WP_023098737.1 | RNA-guided endonuclease InsQ/TnpB family protein | - |
| JJQ57_RS22585 (JJQ57_22585) | - | 4768332..4769018 (-) | 687 | WP_023098998.1 | hypothetical protein | - |
| JJQ57_RS22590 (JJQ57_22590) | - | 4769015..4769599 (-) | 585 | WP_033936255.1 | recombination protein NinG | - |
| JJQ57_RS22595 (JJQ57_22595) | - | 4769596..4770066 (-) | 471 | WP_033936256.1 | hypothetical protein | - |
| JJQ57_RS22600 (JJQ57_22600) | - | 4770059..4770265 (-) | 207 | WP_033936257.1 | TraR/DksA family transcriptional regulator | - |
| JJQ57_RS22605 (JJQ57_22605) | - | 4770267..4770749 (-) | 483 | WP_169309828.1 | hypothetical protein | - |
| JJQ57_RS22610 (JJQ57_22610) | - | 4770889..4771575 (-) | 687 | WP_023093580.1 | hypothetical protein | - |
| JJQ57_RS22615 (JJQ57_22615) | dnaB | 4771575..4772915 (-) | 1341 | WP_023093581.1 | replicative DNA helicase | - |
| JJQ57_RS22620 (JJQ57_22620) | - | 4772912..4773901 (-) | 990 | WP_033936259.1 | replication protein | - |
| JJQ57_RS22625 (JJQ57_22625) | - | 4774095..4774667 (-) | 573 | WP_033936260.1 | hypothetical protein | - |
| JJQ57_RS22630 (JJQ57_22630) | - | 4774703..4774900 (-) | 198 | WP_012614002.1 | Cro/CI family transcriptional regulator | - |
| JJQ57_RS22635 (JJQ57_22635) | - | 4775055..4775822 (+) | 768 | WP_226008432.1 | helix-turn-helix transcriptional regulator | - |
| JJQ57_RS22640 (JJQ57_22640) | - | 4775995..4777035 (+) | 1041 | WP_033936262.1 | ParA family protein | - |
| JJQ57_RS22645 (JJQ57_22645) | - | 4777421..4778074 (+) | 654 | WP_169309827.1 | zinc ribbon domain-containing protein | - |
| JJQ57_RS22650 (JJQ57_22650) | - | 4778427..4778729 (+) | 303 | WP_169309826.1 | hypothetical protein | - |
| JJQ57_RS22655 (JJQ57_22655) | - | 4778739..4778945 (+) | 207 | WP_023657539.1 | hypothetical protein | - |
| JJQ57_RS22660 (JJQ57_22660) | - | 4779244..4780539 (+) | 1296 | WP_236675786.1 | hypothetical protein | - |
| JJQ57_RS22665 (JJQ57_22665) | - | 4780760..4781251 (+) | 492 | WP_023098759.1 | hypothetical protein | - |
| JJQ57_RS22670 (JJQ57_22670) | - | 4781545..4781877 (+) | 333 | WP_123906742.1 | hypothetical protein | - |
| JJQ57_RS22675 (JJQ57_22675) | - | 4781912..4782151 (+) | 240 | WP_023098761.1 | hypothetical protein | - |
| JJQ57_RS22680 (JJQ57_22680) | - | 4782369..4782593 (+) | 225 | WP_023098762.1 | hypothetical protein | - |
| JJQ57_RS22685 (JJQ57_22685) | - | 4782590..4782955 (+) | 366 | WP_023098763.1 | hypothetical protein | - |
| JJQ57_RS22690 (JJQ57_22690) | - | 4782990..4784135 (-) | 1146 | WP_010792309.1 | RNA-guided endonuclease InsQ/TnpB family protein | - |
| JJQ57_RS22695 (JJQ57_22695) | - | 4784266..4784778 (+) | 513 | WP_023657541.1 | hypothetical protein | - |
| JJQ57_RS22700 (JJQ57_22700) | - | 4784885..4785916 (+) | 1032 | WP_023098765.1 | DNA cytosine methyltransferase | - |
| JJQ57_RS22705 (JJQ57_22705) | - | 4785913..4786050 (+) | 138 | WP_023098766.1 | hypothetical protein | - |
| JJQ57_RS22710 (JJQ57_22710) | - | 4786201..4786506 (+) | 306 | WP_023657542.1 | hypothetical protein | - |
| JJQ57_RS22715 (JJQ57_22715) | - | 4786549..4787358 (+) | 810 | WP_023127333.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| JJQ57_RS22720 (JJQ57_22720) | - | 4787355..4788185 (+) | 831 | WP_023127334.1 | hypothetical protein | - |
| JJQ57_RS22725 (JJQ57_22725) | ssb | 4788182..4788643 (+) | 462 | WP_023127335.1 | single-stranded DNA-binding protein | Machinery gene |
| JJQ57_RS22730 (JJQ57_22730) | - | 4788707..4789306 (+) | 600 | WP_023127336.1 | hypothetical protein | - |
| JJQ57_RS22735 (JJQ57_22735) | - | 4789469..4789693 (+) | 225 | WP_023127337.1 | hypothetical protein | - |
| JJQ57_RS22740 (JJQ57_22740) | - | 4789702..4790832 (+) | 1131 | WP_197541269.1 | hypothetical protein | - |
| JJQ57_RS32640 | - | 4790832..4791281 (+) | 450 | WP_023098773.1 | hypothetical protein | - |
| JJQ57_RS22750 (JJQ57_22750) | - | 4791274..4791717 (+) | 444 | WP_023098774.1 | hypothetical protein | - |
| JJQ57_RS22755 (JJQ57_22755) | - | 4791710..4792006 (+) | 297 | WP_023098775.1 | Lar family restriction alleviation protein | - |
| JJQ57_RS22760 (JJQ57_22760) | - | 4792325..4792768 (+) | 444 | WP_023098776.1 | hypothetical protein | - |
| JJQ57_RS22765 (JJQ57_22765) | - | 4792761..4793042 (+) | 282 | WP_023098777.1 | hypothetical protein | - |
| JJQ57_RS22770 (JJQ57_22770) | - | 4793235..4793891 (+) | 657 | WP_023098778.1 | hypothetical protein | - |
| JJQ57_RS22775 (JJQ57_22775) | - | 4793888..4794223 (+) | 336 | WP_023098779.1 | hypothetical protein | - |
| JJQ57_RS22780 (JJQ57_22780) | - | 4794220..4794381 (+) | 162 | WP_162836351.1 | hypothetical protein | - |
| JJQ57_RS32645 | - | 4794472..4794717 (+) | 246 | WP_023098780.1 | hypothetical protein | - |
| JJQ57_RS22785 (JJQ57_22785) | - | 4794714..4795688 (-) | 975 | WP_031630076.1 | tyrosine-type recombinase/integrase | - |
| JJQ57_RS22795 (JJQ57_22795) | purC | 4795981..4796691 (-) | 711 | WP_003086275.1 | phosphoribosylaminoimidazolesuccinocarboxamide synthase | - |
| JJQ57_RS22800 (JJQ57_22800) | - | 4796720..4797478 (-) | 759 | WP_003086273.1 | MBL fold metallo-hydrolase | - |
Sequence
Protein
Download Length: 153 a.a. Molecular weight: 17113.94 Da Isoelectric Point: 6.4768
>NTDB_id=528461 JJQ57_RS22725 WP_023127335.1 4788182..4788643(+) (ssb) [Pseudomonas aeruginosa strain PA19-3047]
MSRGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERAEFHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEVIVDMHGQMQMLGGKPVNDQAAQSRQSPQQQSAPQQRPQVAQANDSFDDDIPF
MSRGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERAEFHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEVIVDMHGQMQMLGGKPVNDQAAQSRQSPQQQSAPQQRPQVAQANDSFDDDIPF
Nucleotide
Download Length: 462 bp
>NTDB_id=528461 JJQ57_RS22725 WP_023127335.1 4788182..4788643(+) (ssb) [Pseudomonas aeruginosa strain PA19-3047]
ATGAGCCGTGGAGTGAACAAAGTAATCCTGGTCGGCAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAACGCGCCGAGT
TCCACCGCGTGGTGTTCTTCGGTCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACACGTAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGGTAATCGTCGACATGCACGG
ACAGATGCAGATGCTTGGCGGAAAGCCTGTAAATGACCAGGCGGCTCAGAGCAGGCAATCTCCTCAGCAGCAGAGCGCAC
CGCAGCAGCGCCCGCAGGTTGCGCAGGCTAACGACAGCTTCGACGACGATATCCCGTTCTAA
ATGAGCCGTGGAGTGAACAAAGTAATCCTGGTCGGCAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAACGCGCCGAGT
TCCACCGCGTGGTGTTCTTCGGTCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACACGTAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGGTAATCGTCGACATGCACGG
ACAGATGCAGATGCTTGGCGGAAAGCCTGTAAATGACCAGGCGGCTCAGAGCAGGCAATCTCCTCAGCAGCAGAGCGCAC
CGCAGCAGCGCCCGCAGGTTGCGCAGGCTAACGACAGCTTCGACGACGATATCCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.714 |
100 |
0.66 |
| ssb | Glaesserella parasuis strain SC1401 |
50.276 |
100 |
0.595 |
| ssb | Neisseria meningitidis MC58 |
42.614 |
100 |
0.49 |
| ssb | Neisseria gonorrhoeae MS11 |
42.614 |
100 |
0.49 |