Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JJQ56_RS24290 Genome accession   NZ_CP068237
Coordinates   5068303..5068827 (-) Length   174 a.a.
NCBI ID   WP_004151744.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain YDKL-002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5063303..5073827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJQ56_RS24280 - 5063761..5066019 (-) 2259 WP_202024244.1 TonB-dependent siderophore receptor -
  JJQ56_RS24285 - 5066608..5068188 (+) 1581 WP_202024245.1 lytic transglycosylase F -
  JJQ56_RS24290 ssb 5068303..5068827 (-) 525 WP_004151744.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JJQ56_RS24295 uvrA 5069082..5071907 (+) 2826 WP_153679917.1 excinuclease ABC subunit UvrA -
  JJQ56_RS24300 - 5072051..5072458 (+) 408 WP_153679916.1 hypothetical protein -
  JJQ56_RS24305 - 5072467..5072775 (+) 309 WP_227668837.1 hypothetical protein -
  JJQ56_RS24310 - 5072777..5073130 (-) 354 WP_153679914.1 MmcQ/YjbR family DNA-binding protein -
  JJQ56_RS24315 - 5073134..5073550 (-) 417 WP_153679979.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18711.70 Da        Isoelectric Point: 5.2358

>NTDB_id=528397 JJQ56_RS24290 WP_004151744.1 5068303..5068827(-) (ssb) [Klebsiella quasipneumoniae strain YDKL-002]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=528397 JJQ56_RS24290 WP_004151744.1 5068303..5068827(-) (ssb) [Klebsiella quasipneumoniae strain YDKL-002]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCAGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCTGGTGAGTACCTGCGTAAAGGCTCTCAGGTGTACATT
GAAGGCCAGCTGCGTACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACTGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCGCCGGCAGGCGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGGCTCCGGCAGCGCCT
TCCAACGAACCGCCGATGGACTTCGACGACGACATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.776
  ssb Glaesserella parasuis strain SC1401

59.239

100

0.626
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5