Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JJJ22_RS01945 Genome accession   NZ_CP068232
Coordinates   381011..381580 (+) Length   189 a.a.
NCBI ID   WP_010674212.1    Uniprot ID   A0A081LN46
Organism   Aeromonas caviae isolate Aero19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 376011..386580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJJ22_RS21615 - 376692..376817 (+) 126 WP_010674215.1 hypothetical protein -
  JJJ22_RS01935 (JJJ22_01935) uvrA 376934..379762 (-) 2829 WP_200163881.1 excinuclease ABC subunit UvrA -
  JJJ22_RS01940 (JJJ22_01940) - 379855..380493 (-) 639 WP_010674213.1 LuxR C-terminal-related transcriptional regulator -
  JJJ22_RS01945 (JJJ22_01945) ssb 381011..381580 (+) 570 WP_010674212.1 single-stranded DNA-binding protein Machinery gene
  JJJ22_RS01950 (JJJ22_01950) - 381741..382934 (+) 1194 WP_200163880.1 tyrosine-type recombinase/integrase -
  JJJ22_RS01955 (JJJ22_01955) - 382956..384437 (+) 1482 WP_200163879.1 site-specific integrase -
  JJJ22_RS01960 (JJJ22_01960) - 384434..386497 (+) 2064 WP_223930587.1 integrase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20813.18 Da        Isoelectric Point: 5.9247

>NTDB_id=528332 JJJ22_RS01945 WP_010674212.1 381011..381580(+) (ssb) [Aeromonas caviae isolate Aero19]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGGQGMGGQSSQGNWGQPQQAAPQQNMQRPAAPQQNMQPQG
GYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=528332 JJJ22_RS01945 WP_010674212.1 381011..381580(+) (ssb) [Aeromonas caviae isolate Aero19]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGATACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AATGGCACCGTGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAGCTCCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACCGAGGTGCTGGTCGACAGCTT
CACCGGTGTGATGCAGATGCTGGGTGGCCGTCCGCAGGGCGGTGGCCAGGGCATGGGCGGCCAGTCATCCCAGGGCAACT
GGGGCCAGCCGCAACAGGCTGCACCGCAACAGAACATGCAACGTCCTGCTGCCCCGCAGCAGAACATGCAACCGCAAGGC
GGTTACGGCCGTCCGGCCCAGCAGCCGCAATCCGCCCCGCCGGTCTACAACGAACCGCCGATGGATTTCGACGACGATAT
TCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081LN46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.912

100

0.704
  ssb Glaesserella parasuis strain SC1401

54.011

98.942

0.534
  ssb Neisseria meningitidis MC58

47.34

99.471

0.471
  ssb Neisseria gonorrhoeae MS11

46.774

98.413

0.46