Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E1N14_RS18840 Genome accession   NZ_CP068230
Coordinates   4220751..4221476 (-) Length   241 a.a.
NCBI ID   WP_025010183.1    Uniprot ID   -
Organism   Shewanella algae strain CECT-5071     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4215751..4226476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1N14_RS18830 (E1N14_018835) - 4218538..4219452 (-) 915 WP_025010181.1 LysR family transcriptional regulator -
  E1N14_RS18835 (E1N14_018840) - 4219578..4220687 (+) 1110 WP_025010182.1 HisA/HisF-related TIM barrel protein -
  E1N14_RS18840 (E1N14_018845) ssb 4220751..4221476 (-) 726 WP_025010183.1 single-stranded DNA-binding protein Machinery gene
  E1N14_RS18845 (E1N14_018850) - 4221511..4222878 (-) 1368 WP_025010184.1 MFS transporter -
  E1N14_RS18850 (E1N14_018855) uvrA 4223100..4225922 (+) 2823 WP_037436858.1 excinuclease ABC subunit UvrA -
  E1N14_RS18855 (E1N14_018860) - 4225930..4226280 (+) 351 WP_129586019.1 hypothetical protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26525.91 Da        Isoelectric Point: 5.9130

>NTDB_id=528324 E1N14_RS18840 WP_025010183.1 4220751..4221476(-) (ssb) [Shewanella algae strain CECT-5071]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQSQGSYGGGQAQSQSQYNAPQQS
GGYQPKPAQQPQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIP
F

Nucleotide


Download         Length: 726 bp        

>NTDB_id=528324 E1N14_RS18840 WP_025010183.1 4220751..4221476(-) (ssb) [Shewanella algae strain CECT-5071]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAAGACCAGCAGGGCCAACAGCAAGAGCGTACCGAAT
GGCATCGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAATATCTGCGCAAAGGCTCGCAAGTGTATCTGGAA
GGCAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTTGATATGGGCGG
TACCATGCAGATGCTGGGTGGCCGTAACCAAAATCAAGGTGGTATGAGCCAAGGCGGCAATCAGGGTGGTATGAACCAAG
GTGGTATGAACCAAAGCCAAGGTAGTTACGGTGGTGGTCAGGCACAGTCTCAATCTCAATACAATGCGCCACAGCAGTCC
GGCGGCTATCAGCCCAAGCCTGCCCAGCAACCGCAGCAGCCACAACAGCCACAACAGCAGTACAACGCGCCGCAGCAGCA
AAGCTATGGTCAGCAGCAGAACTCAGGTTATGCGCCCAAGCCACAGCAGCCAGCGCCGCAACAACAGGCAGCTCCGCAAC
AGCGGCCGGCACCACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.675

100

0.531
  ssb Glaesserella parasuis strain SC1401

45.798

98.755

0.452
  ssb Neisseria gonorrhoeae MS11

41.949

97.925

0.411
  ssb Neisseria meningitidis MC58

41.102

97.925

0.402