Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JKK46_RS03130 Genome accession   NZ_CP068229
Coordinates   704922..705647 (+) Length   241 a.a.
NCBI ID   WP_025010183.1    Uniprot ID   -
Organism   Shewanella algae strain 150735     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 699922..710647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKK46_RS03115 (JKK46_03115) - 700119..700469 (-) 351 WP_129586019.1 hypothetical protein -
  JKK46_RS03120 (JKK46_03120) uvrA 700477..703299 (-) 2823 WP_101058423.1 excinuclease ABC subunit UvrA -
  JKK46_RS03125 (JKK46_03125) - 703520..704887 (+) 1368 WP_025010184.1 MFS transporter -
  JKK46_RS03130 (JKK46_03130) ssb 704922..705647 (+) 726 WP_025010183.1 single-stranded DNA-binding protein Machinery gene
  JKK46_RS03135 (JKK46_03135) - 705722..706831 (-) 1110 WP_208128988.1 HisA/HisF-related TIM barrel protein -
  JKK46_RS03140 (JKK46_03140) - 706957..707871 (+) 915 WP_208128989.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26525.91 Da        Isoelectric Point: 5.9130

>NTDB_id=528286 JKK46_RS03130 WP_025010183.1 704922..705647(+) (ssb) [Shewanella algae strain 150735]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQSQGSYGGGQAQSQSQYNAPQQS
GGYQPKPAQQPQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIP
F

Nucleotide


Download         Length: 726 bp        

>NTDB_id=528286 JKK46_RS03130 WP_025010183.1 704922..705647(+) (ssb) [Shewanella algae strain 150735]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAGGACCAACAGGGCCAACAGCAAGAGCGTACCGAGT
GGCACAGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAATATCTGCGCAAAGGCTCGCAAGTGTATCTGGAA
GGCAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTCGATATGGGCGG
TACCATGCAGATGCTGGGTGGCCGTAACCAAAACCAAGGCGGTATGAGCCAAGGCGGCAATCAGGGTGGTATGAACCAAG
GTGGTATGAACCAAAGCCAAGGTAGTTACGGTGGTGGTCAGGCACAGTCTCAATCTCAATACAATGCGCCACAGCAGTCC
GGCGGCTATCAGCCCAAGCCTGCTCAGCAACCGCAGCAGCCACAACAGCCACAACAGCAGTACAACGCGCCGCAGCAGCA
AAGCTATGGTCAGCAGCAGAACTCAGGTTATGCGCCCAAGCCACAGCAGCCCGCGCCGCAACAACAGGCTGCTCCGCAGC
AGCGTCCGGCACCACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.675

100

0.531
  ssb Glaesserella parasuis strain SC1401

45.798

98.755

0.452
  ssb Neisseria gonorrhoeae MS11

41.949

97.925

0.411
  ssb Neisseria meningitidis MC58

41.102

97.925

0.402