Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JKK44_RS18720 Genome accession   NZ_CP068228
Coordinates   4190522..4191244 (-) Length   240 a.a.
NCBI ID   WP_071238700.1    Uniprot ID   A0A380A5M9
Organism   Shewanella algae strain G1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4185522..4196244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKK44_RS18710 (JKK44_18705) fdxH 4185684..4186607 (-) 924 WP_071238702.1 formate dehydrogenase subunit beta -
  JKK44_RS18715 (JKK44_18710) fdnG 4186610..4189624 (-) 3015 WP_139190825.1 formate dehydrogenase-N subunit alpha -
  JKK44_RS18720 (JKK44_18715) ssb 4190522..4191244 (-) 723 WP_071238700.1 single-stranded DNA-binding protein Machinery gene
  JKK44_RS18725 (JKK44_18720) - 4191279..4192646 (-) 1368 WP_071238699.1 MFS transporter -
  JKK44_RS18730 (JKK44_18725) uvrA 4192868..4195690 (+) 2823 WP_037436858.1 excinuclease ABC subunit UvrA -
  JKK44_RS18735 (JKK44_18730) - 4195698..4196048 (+) 351 WP_129586019.1 hypothetical protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 26384.74 Da        Isoelectric Point: 5.9130

>NTDB_id=528278 JKK44_RS18720 WP_071238700.1 4190522..4191244(-) (ssb) [Shewanella algae strain G1]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQNQGGYGGGQAQSQSQSQYNAPQ
QSGGYQPKPAQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 723 bp        

>NTDB_id=528278 JKK44_RS18720 WP_071238700.1 4190522..4191244(-) (ssb) [Shewanella algae strain G1]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGGCAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAGGACCAACAGGGCCAACAGCAAGAGCGTACCGAGT
GGCATCGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAGTACCTGCGCAAAGGCTCGCAAGTGTATCTGGAA
GGTAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTCGATATGGGCGG
TACCATGCAGATGCTGGGTGGCCGTAACCAAAACCAAGGCGGTATGAGCCAGGGCGGCAATCAGGGCGGTATGAACCAAG
GTGGTATGAACCAAAACCAAGGTGGTTACGGCGGTGGTCAGGCACAGTCTCAGTCTCAATCTCAATACAATGCGCCACAG
CAGTCCGGCGGCTATCAGCCCAAGCCTGCTCAGCAACCGCAGCAGCCACAACAGCAGTACAACGCGCCGCAGCAGCAAAG
CTATGGTCAGCAGCAGAACTCAGGTTATGCGCCCAAGCCACAGCAGCCAGCGCCGCAACAACAGGCAGCTCCGCAACAGC
GGCCGGCACCACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCGTTC
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380A5M9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.719

100

0.542
  ssb Glaesserella parasuis strain SC1401

45.57

98.75

0.45
  ssb Neisseria gonorrhoeae MS11

42.128

97.917

0.413
  ssb Neisseria meningitidis MC58

41.702

97.917

0.408