Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JKK33_RS18170 Genome accession   NZ_CP068227
Coordinates   4091081..4091806 (-) Length   241 a.a.
NCBI ID   WP_025010183.1    Uniprot ID   -
Organism   Shewanella algae strain A59     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4086081..4096806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKK33_RS18160 (JKK33_18160) - 4088868..4089782 (-) 915 WP_208125138.1 LysR family transcriptional regulator -
  JKK33_RS18165 (JKK33_18165) - 4089908..4091017 (+) 1110 WP_025010182.1 HisA/HisF-related TIM barrel protein -
  JKK33_RS18170 (JKK33_18170) ssb 4091081..4091806 (-) 726 WP_025010183.1 single-stranded DNA-binding protein Machinery gene
  JKK33_RS18175 (JKK33_18175) - 4091841..4093208 (-) 1368 WP_208125139.1 MFS transporter -
  JKK33_RS18180 (JKK33_18180) uvrA 4093430..4096252 (+) 2823 WP_167716905.1 excinuclease ABC subunit UvrA -
  JKK33_RS18185 (JKK33_18185) - 4096260..4096610 (+) 351 WP_129586019.1 hypothetical protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26525.91 Da        Isoelectric Point: 5.9130

>NTDB_id=528254 JKK33_RS18170 WP_025010183.1 4091081..4091806(-) (ssb) [Shewanella algae strain A59]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQSQGSYGGGQAQSQSQYNAPQQS
GGYQPKPAQQPQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIP
F

Nucleotide


Download         Length: 726 bp        

>NTDB_id=528254 JKK33_RS18170 WP_025010183.1 4091081..4091806(-) (ssb) [Shewanella algae strain A59]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAGGACCAACAGGGCCAACAGCAAGAGCGTACCGAGT
GGCACAGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAATATCTGCGCAAAGGCTCGCAAGTGTATCTGGAA
GGCAAGCTGCAGACCCGCAAATGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTCGATATGGGCGG
CACCATGCAGATGCTGGGTGGCCGTAACCAAAATCAAGGTGGTATGAGCCAAGGCGGCAATCAGGGTGGTATGAACCAAG
GTGGTATGAACCAAAGCCAAGGTAGTTACGGTGGTGGTCAGGCACAGTCTCAATCTCAATACAATGCGCCACAGCAGTCC
GGCGGCTATCAGCCCAAGCCTGCCCAGCAACCGCAGCAGCCACAACAGCCACAACAGCAGTACAACGCGCCGCAGCAGCA
AAGCTATGGTCAGCAGCAGAACTCAGGTTATGCGCCCAAGCCACAGCAGCCAGCGCCGCAACAACAGGCAGCTCCGCAAC
AGCGGCCGGCACCACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.675

100

0.531
  ssb Glaesserella parasuis strain SC1401

45.798

98.755

0.452
  ssb Neisseria gonorrhoeae MS11

41.949

97.925

0.411
  ssb Neisseria meningitidis MC58

41.102

97.925

0.402