Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JKK45_RS18750 Genome accession   NZ_CP068226
Coordinates   4261431..4262153 (-) Length   240 a.a.
NCBI ID   WP_208123819.1    Uniprot ID   -
Organism   Shewanella algae strain A291     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4256431..4267153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKK45_RS18740 (JKK45_18745) - 4259207..4260121 (-) 915 WP_190533455.1 LysR family transcriptional regulator -
  JKK45_RS18745 (JKK45_18750) - 4260247..4261356 (+) 1110 WP_208123818.1 HisA/HisF-related TIM barrel protein -
  JKK45_RS18750 (JKK45_18755) ssb 4261431..4262153 (-) 723 WP_208123819.1 single-stranded DNA-binding protein Machinery gene
  JKK45_RS18755 (JKK45_18760) - 4262188..4263555 (-) 1368 WP_025010184.1 MFS transporter -
  JKK45_RS18760 (JKK45_18765) uvrA 4263777..4266599 (+) 2823 WP_208123820.1 excinuclease ABC subunit UvrA -
  JKK45_RS18765 (JKK45_18770) - 4266607..4266957 (+) 351 WP_129979955.1 hypothetical protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 26387.74 Da        Isoelectric Point: 5.9130

>NTDB_id=528230 JKK45_RS18750 WP_208123819.1 4261431..4262153(-) (ssb) [Shewanella algae strain A291]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQSQGSYGGGQAQSQSQSQYNAPQ
QSGGYQPKPAQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 723 bp        

>NTDB_id=528230 JKK45_RS18750 WP_208123819.1 4261431..4262153(-) (ssb) [Shewanella algae strain A291]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAGGACCAACAGGGCCAACAGCAAGAGCGTACCGAGT
GGCACAGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAGTACCTGCGCAAAGGCTCGCAAGTGTATCTGGAA
GGCAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTCGATATGGGCGG
TACCATGCAGATGCTGGGTGGCCGTAACCAAAACCAAGGCGGTATGAGCCAAGGCGGCAATCAGGGCGGTATGAACCAAG
GTGGTATGAACCAAAGCCAAGGTAGTTACGGTGGTGGTCAGGCACAGTCTCAATCTCAATCTCAATACAATGCGCCACAG
CAGTCCGGCGGCTATCAGCCCAAGCCTGCTCAGCAACCGCAGCAGCCACAACAACAGTACAACGCGCCGCAGCAGCAAAG
CTATGGTCAGCAGCAGAACTCAGGTTATGCGCCCAAGCCACAGCAGCCAGCGCCGCAACAACAGGCAGCTCCGCAGCAGC
GGCCGGCACCACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCGTTC
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.893

100

0.533
  ssb Glaesserella parasuis strain SC1401

45.57

98.75

0.45
  ssb Neisseria gonorrhoeae MS11

42.128

97.917

0.413
  ssb Neisseria meningitidis MC58

41.277

97.917

0.404