Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6J08_RS08555 Genome accession   NZ_CP068219
Coordinates   1717344..1717859 (-) Length   171 a.a.
NCBI ID   WP_017637494.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain FDAARGOS_1151     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1712344..1722859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J08_RS08525 (I6J08_08520) - 1713096..1713476 (+) 381 WP_017638452.1 hypothetical protein -
  I6J08_RS08530 (I6J08_08525) - 1713553..1714131 (-) 579 WP_017637488.1 histidine phosphatase family protein -
  I6J08_RS08535 (I6J08_08530) - 1714154..1714783 (-) 630 WP_017637489.1 LysE family translocator -
  I6J08_RS08540 (I6J08_08535) - 1715467..1715721 (-) 255 WP_017637491.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  I6J08_RS08545 (I6J08_08540) - 1716281..1716799 (-) 519 WP_108017011.1 VOC family protein -
  I6J08_RS08550 (I6J08_08545) rpsR 1717058..1717300 (-) 243 WP_002451519.1 30S ribosomal protein S18 -
  I6J08_RS08555 (I6J08_08550) ssbA 1717344..1717859 (-) 516 WP_017637494.1 single-stranded DNA-binding protein Machinery gene
  I6J08_RS08560 (I6J08_08555) rpsF 1717881..1718177 (-) 297 WP_017637495.1 30S ribosomal protein S6 -
  I6J08_RS08565 (I6J08_08560) - 1718557..1719378 (+) 822 WP_017637496.1 GH25 family lysozyme -
  I6J08_RS08570 (I6J08_08565) - 1719443..1719634 (+) 192 WP_017637497.1 hypothetical protein -
  I6J08_RS08575 (I6J08_08570) ychF 1719767..1720864 (-) 1098 WP_017637498.1 redox-regulated ATPase YchF -
  I6J08_RS08580 (I6J08_08575) - 1720876..1721079 (-) 204 WP_017637499.1 DUF951 domain-containing protein -
  I6J08_RS08585 (I6J08_08580) - 1721100..1721978 (-) 879 WP_017637500.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18846.38 Da        Isoelectric Point: 4.7410

>NTDB_id=528189 I6J08_RS08555 WP_017637494.1 1717344..1717859(-) (ssbA) [Staphylococcus pasteuri strain FDAARGOS_1151]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKSNSNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=528189 I6J08_RS08555 WP_017637494.1 1717344..1717859(-) (ssbA) [Staphylococcus pasteuri strain FDAARGOS_1151]
ATGATAAATAGAGTTGTATTAGTAGGTCGTTTGACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TTAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTAACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAACGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTACGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCTAAATCTAATTCAAATCAATCAGATAACCCATTTGCAAATGCAAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.894

100

0.637
  ssb Latilactobacillus sakei subsp. sakei 23K

53.179

100

0.538
  ssb Glaesserella parasuis strain SC1401

34.392

100

0.38
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

65.497

0.374