Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6J09_RS08100 Genome accession   NZ_CP068216
Coordinates   1689682..1690197 (+) Length   171 a.a.
NCBI ID   WP_017637494.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain FDAARGOS_1152     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1684682..1695197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J09_RS08070 (I6J09_08065) - 1685564..1686442 (+) 879 WP_046467355.1 mechanosensitive ion channel family protein -
  I6J09_RS08075 (I6J09_08070) - 1686463..1686666 (+) 204 WP_017637499.1 DUF951 domain-containing protein -
  I6J09_RS08080 (I6J09_08075) ychF 1686678..1687775 (+) 1098 WP_017637498.1 redox-regulated ATPase YchF -
  I6J09_RS08085 (I6J09_08080) - 1687908..1688099 (-) 192 WP_017637497.1 hypothetical protein -
  I6J09_RS08090 (I6J09_08085) - 1688164..1688985 (-) 822 Protein_1569 GH25 family lysozyme -
  I6J09_RS08095 (I6J09_08090) rpsF 1689364..1689660 (+) 297 WP_017637495.1 30S ribosomal protein S6 -
  I6J09_RS08100 (I6J09_08095) ssbA 1689682..1690197 (+) 516 WP_017637494.1 single-stranded DNA-binding protein Machinery gene
  I6J09_RS08105 (I6J09_08100) rpsR 1690241..1690483 (+) 243 WP_002451519.1 30S ribosomal protein S18 -
  I6J09_RS08110 (I6J09_08105) - 1690735..1691253 (+) 519 WP_108017011.1 VOC family protein -
  I6J09_RS08115 (I6J09_08110) - 1691813..1692064 (+) 252 WP_046467359.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  I6J09_RS08120 (I6J09_08115) - 1692748..1693377 (+) 630 WP_154895632.1 LysE family translocator -
  I6J09_RS08125 (I6J09_08120) - 1693400..1693978 (+) 579 WP_046467361.1 histidine phosphatase family protein -
  I6J09_RS08130 (I6J09_08125) - 1694055..1694435 (-) 381 WP_017638452.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18846.38 Da        Isoelectric Point: 4.7410

>NTDB_id=528152 I6J09_RS08100 WP_017637494.1 1689682..1690197(+) (ssbA) [Staphylococcus pasteuri strain FDAARGOS_1152]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKSNSNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=528152 I6J09_RS08100 WP_017637494.1 1689682..1690197(+) (ssbA) [Staphylococcus pasteuri strain FDAARGOS_1152]
ATGATAAATAGAGTTGTATTAGTAGGTCGTTTGACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTAACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAAAA
TTCACAAAACGGTGGTGGCCAACGTTCACAAAACAACGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCTAAATCTAATTCAAATCAATCAGATAACCCATTTGCTAATGCAAACGGA
CCTATTGATATTAGTGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.894

100

0.637
  ssb Latilactobacillus sakei subsp. sakei 23K

53.179

100

0.538
  ssb Glaesserella parasuis strain SC1401

34.392

100

0.38
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

65.497

0.374