Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | U063_RS06310 | Genome accession | NC_022886 |
| Coordinates | 1285849..1286859 (+) | Length | 336 a.a. |
| NCBI ID | WP_000664530.1 | Uniprot ID | - |
| Organism | Helicobacter pylori BM012A | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1280849..1291859
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U063_RS06285 (U063_1258) | - | 1281025..1282347 (-) | 1323 | WP_023592439.1 | M23 family metallopeptidase | - |
| U063_RS06290 (U063_1259) | - | 1282357..1283301 (-) | 945 | WP_023592440.1 | outer membrane beta-barrel protein | - |
| U063_RS06295 (U063_1260) | - | 1283310..1284179 (-) | 870 | WP_023592441.1 | outer membrane beta-barrel protein | - |
| U063_RS06300 (U063_1261) | - | 1284169..1284891 (-) | 723 | WP_023592442.1 | hypothetical protein | - |
| U063_RS06305 (U063_1262) | panB | 1285040..1285852 (+) | 813 | WP_023592443.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| U063_RS06310 (U063_1263) | ruvB | 1285849..1286859 (+) | 1011 | WP_000664530.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| U063_RS06315 (U063_1264) | tatB | 1286927..1287409 (+) | 483 | WP_023592444.1 | Sec-independent protein translocase protein TatB | - |
| U063_RS06320 (U063_1265) | tatC | 1287402..1288196 (+) | 795 | WP_023592445.1 | twin-arginine translocase subunit TatC | - |
| U063_RS06325 (U063_1266) | queA | 1288200..1289237 (+) | 1038 | WP_023592446.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| U063_RS06330 (U063_1267) | rsmG | 1289234..1289770 (+) | 537 | WP_001068845.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| U063_RS06335 (U063_1268) | - | 1289764..1289994 (+) | 231 | WP_000944428.1 | PP0621 family protein | - |
| U063_RS06340 (U063_1269) | - | 1289997..1290404 (+) | 408 | WP_023592447.1 | hypothetical protein | - |
| U063_RS06350 (U063_1271) | - | 1290553..1291125 (-) | 573 | WP_226975763.1 | outer membrane protein | - |
| U063_RS06355 (U063_1272) | - | 1291446..1291820 (+) | 375 | WP_000772151.1 | chemotaxis response regulator CheY | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37306.32 Da Isoelectric Point: 6.0715
>NTDB_id=52809 U063_RS06310 WP_000664530.1 1285849..1286859(+) (ruvB) [Helicobacter pylori BM012A]
MKERIVNLETLDFETSQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=52809 U063_RS06310 WP_000664530.1 1285849..1286859(+) (ruvB) [Helicobacter pylori BM012A]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAGTCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTAACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGACGAAATCCACCGGCTCAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGTTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
GGCCCTTATCATCAAAAAAGCCGCCATTAAACTCAACCAAGACATCAAAGAAGAAAGTGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTCGTTAAAAATTCAAGCTTGATG
GATTTGAACATCACTTTGCATGCCTTGAATGAATTAGGCGTGAATGAATTGGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAGTCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTAACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGACGAAATCCACCGGCTCAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGTTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
GGCCCTTATCATCAAAAAAGCCGCCATTAAACTCAACCAAGACATCAAAGAAGAAAGTGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTCGTTAAAAATTCAAGCTTGATG
GATTTGAACATCACTTTGCATGCCTTGAATGAATTAGGCGTGAATGAATTGGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
98.214 |
100 |
0.982 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
50.789 |
94.345 |
0.479 |