Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6J13_RS08420 Genome accession   NZ_CP068213
Coordinates   1709770..1710261 (+) Length   163 a.a.
NCBI ID   WP_003030533.1    Uniprot ID   F9PAY8
Organism   Streptococcus constellatus strain FDAARGOS_1156     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1704770..1715261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J13_RS08390 (I6J13_08390) - 1705305..1706144 (+) 840 WP_006269794.1 Cof-type HAD-IIB family hydrolase -
  I6J13_RS09480 - 1706156..1706764 (+) 609 Protein_1635 histidine phosphatase family protein -
  I6J13_RS08405 (I6J13_08405) - 1706845..1707273 (-) 429 WP_020997594.1 hypothetical protein -
  I6J13_RS09485 - 1707248..1708108 (-) 861 WP_052029540.1 phosphodiester glycosidase family protein -
  I6J13_RS09490 - 1708149..1709191 (-) 1043 Protein_1638 GtrA family protein -
  I6J13_RS08415 (I6J13_08415) rpsF 1709468..1709758 (+) 291 WP_003074536.1 30S ribosomal protein S6 -
  I6J13_RS08420 (I6J13_08420) ssb 1709770..1710261 (+) 492 WP_003030533.1 single-stranded DNA-binding protein Machinery gene
  I6J13_RS08425 (I6J13_08425) rpsR 1710298..1710537 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  I6J13_RS08430 (I6J13_08430) - 1710711..1711388 (-) 678 WP_006269791.1 DUF1129 domain-containing protein -
  I6J13_RS08435 (I6J13_08435) - 1711404..1712348 (-) 945 WP_003070861.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18157.86 Da        Isoelectric Point: 4.9008

>NTDB_id=528068 I6J13_RS08420 WP_003030533.1 1709770..1710261(+) (ssb) [Streptococcus constellatus strain FDAARGOS_1156]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGGYASNNFGNSSSNFGNATSANQVPNFSRDENPFGNTNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=528068 I6J13_RS08420 WP_003030533.1 1709770..1710261(+) (ssb) [Streptococcus constellatus strain FDAARGOS_1156]
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAGCTTCGCTATACGCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTCAATCGCAATTTTAAAAATCAAAGTGGCGAGAGAGAAGCAGATTTCATTAACGTTGTAATTT
GGCGCCAGCAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCGCTTATCGGAATTACTGGTCGGATTCAGACACGT
AACTACGAAAACCAGCAAGGTCAACGTGTCTATGTGACAGAAGTCGTAGCGGATAATTTCCAACTATTGGAAAGCCGTGC
TAGTCGTGAAGGTCAATCTTCTGGTGGCTATGCTTCCAACAACTTCGGAAATTCATCTTCCAATTTTGGTAACGCAACTT
CTGCCAACCAAGTACCTAACTTTTCTCGTGATGAAAATCCATTTGGGAATACCAATCCAATGGACATCTCAGATGACGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9PAY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.523

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.871

0.368