NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	BAJP3144_RS14025	Genome accession	NZ_CP082283
Coordinates	2842615..2843310 (-)	Length	231 a.a.
NCBI ID	WP_007408165.1	Uniprot ID	A7Z793
Organism	Bacillus amyloliquefaciens strain JP3144
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2837615..2848310

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAJP3144_RS13995 (BAJP3144_13995)	-	2837630..2838433 (-)	804	WP_017418246.1	M23 family metallopeptidase	-
BAJP3144_RS14000 (BAJP3144_14000)	minD	2838561..2839364 (-)	804	WP_003152655.1	septum site-determining protein MinD	-
BAJP3144_RS14005 (BAJP3144_14005)	minC	2839367..2840047 (-)	681	WP_003152653.1	septum site-determining protein MinC	-
BAJP3144_RS14010 (BAJP3144_14010)	mreD	2840101..2840619 (-)	519	WP_003152650.1	rod shape-determining protein MreD	-
BAJP3144_RS14015 (BAJP3144_14015)	mreC	2840616..2841479 (-)	864	WP_007408166.1	rod shape-determining protein MreC	-
BAJP3144_RS14020 (BAJP3144_14020)	mreB	2841510..2842523 (-)	1014	WP_003152647.1	cell shape-determining protein MreB	-
BAJP3144_RS14025 (BAJP3144_14025)	ysxA/radC	2842615..2843310 (-)	696	WP_007408165.1	DNA repair protein RadC	Machinery gene
BAJP3144_RS14030 (BAJP3144_14030)	-	2843342..2843911 (-)	570	WP_012118105.1	nucleoside triphosphate pyrophosphatase	-
BAJP3144_RS14035 (BAJP3144_14035)	-	2844052..2845053 (-)	1002	WP_022552880.1	SPOR domain-containing protein	-
BAJP3144_RS14040 (BAJP3144_14040)	comC	2845180..2845932 (-)	753	WP_022552879.1	A24 family peptidase	Machinery gene
BAJP3144_RS14045 (BAJP3144_14045)	-	2846073..2847365 (-)	1293	WP_017418285.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-

Sequence

Protein

Download Length: 231 a.a. Molecular weight: 26080.30 Da Isoelectric Point: 9.1909

                                >NTDB_id=528064 BAJP3144_RS14025 WP_007408165.1 2842615..2843310(-) (ysxA/radC) [Bacillus amyloliquefaciens strain JP3144]

MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG

IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH

PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide

Download Length: 696 bp

                                >NTDB_id=528064 BAJP3144_RS14025 WP_007408165.1 2842615..2843310(-) (ysxA/radC) [Bacillus amyloliquefaciens strain JP3144]

TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG

AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG

CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGACTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA

ATCGGCACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA

TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT

GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC

CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCACAATCATCCTTCAGGAGATCC

TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC

ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A7Z793

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	87.879	100	0.879
radC	Streptococcus pneumoniae TIGR4	49.524	90.909	0.45
radC	Streptococcus pneumoniae R6	49.048	90.909	0.446
radC	Streptococcus pneumoniae D39	49.048	90.909	0.446
radC	Streptococcus gordonii str. Challis substr. CH1	47.143	90.909	0.429

Detailed information NTG0528064