Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I49_RS06530 Genome accession   NZ_CP068206
Coordinates   913922..914506 (-) Length   194 a.a.
NCBI ID   WP_004691666.1    Uniprot ID   A0A7H8SPE4
Organism   Acinetobacter johnsonii strain FDAARGOS_1092     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 908922..919506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I49_RS06515 (I6I49_06510) - 909848..911146 (+) 1299 WP_201952812.1 dicarboxylate/amino acid:cation symporter -
  I6I49_RS06520 (I6I49_06515) - 911270..912160 (-) 891 WP_004691641.1 LysR substrate-binding domain-containing protein -
  I6I49_RS06525 (I6I49_06520) - 912295..913713 (+) 1419 WP_004691643.1 aspartate ammonia-lyase -
  I6I49_RS06530 (I6I49_06525) ssb 913922..914506 (-) 585 WP_004691666.1 single-stranded DNA-binding protein Machinery gene
  I6I49_RS06535 (I6I49_06530) - 914558..915922 (-) 1365 WP_201952815.1 MFS transporter -
  I6I49_RS06540 (I6I49_06535) - 916082..917161 (-) 1080 WP_058870674.1 DUF475 domain-containing protein -
  I6I49_RS06545 (I6I49_06540) tenA 917373..918047 (+) 675 WP_004691671.1 thiaminase II -
  I6I49_RS06550 (I6I49_06545) - 918209..918583 (+) 375 WP_063454598.1 hypothetical protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21300.03 Da        Isoelectric Point: 6.4819

>NTDB_id=527971 I6I49_RS06530 WP_004691666.1 913922..914506(-) (ssb) [Acinetobacter johnsonii strain FDAARGOS_1092]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQMQGGNDGYAQPRFNNNQGGGYNNNNNQGGYGGNPAAGNSNNQQ
SGYANNNPSGFAPKAAPQSAPAAAPADMDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=527971 I6I49_RS06530 WP_004691666.1 913922..914506(-) (ssb) [Acinetobacter johnsonii strain FDAARGOS_1092]
ATGCGCGGTGTAAATAAAGTTATTTTAGTGGGCACATTAGGCCGAGATCCAGAGACGAAAACTTTTCCAAACGGTGGTTC
GTTGACCCAGTTTTCAATTGCCACGAGCGACTCTTGGACAGACAAAAGCACAGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGTTACACAACCGTCTAGGTGAAATTGCGCAACAATACCTACGTAAAGGTTCGAAAGTTTATATTGAAGGT
TCACTGCGTACTCGTCAGTGGACCGATCAAAATGGTCAAGAACGCTACACCACAGAAATTCGTGGTGAGCAAATGCAGAT
GCTCGACAACAACCGTCAGCAAGGTGAGCAAATGCAAGGCGGAAATGATGGTTATGCACAACCACGTTTCAACAATAACC
AAGGTGGTGGTTATAACAATAACAACAACCAAGGTGGTTACGGCGGCAACCCTGCAGCAGGTAATAGCAACAACCAACAA
AGTGGTTATGCGAACAATAACCCAAGCGGTTTTGCACCAAAGGCGGCTCCTCAGTCAGCGCCTGCGGCAGCACCAGCAGA
TATGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SPE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.724

100

0.459
  ssb Neisseria meningitidis MC58

41.414

100

0.423
  ssb Neisseria gonorrhoeae MS11

41.414

100

0.423