Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   I6I49_RS06000 Genome accession   NZ_CP068206
Coordinates   803894..804631 (-) Length   245 a.a.
NCBI ID   WP_130235305.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1092     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 798894..809631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I49_RS05980 (I6I49_05975) aroB 799583..800668 (-) 1086 WP_201952677.1 3-dehydroquinate synthase -
  I6I49_RS05985 (I6I49_05980) aroK 800699..801232 (-) 534 WP_201952680.1 shikimate kinase AroK -
  I6I49_RS05990 (I6I49_05985) pilQ 801270..803303 (-) 2034 Protein_811 type IV pilus secretin PilQ -
  I6I49_RS05995 (I6I49_05990) pilP 803367..803894 (-) 528 WP_087011772.1 pilus assembly protein PilP Machinery gene
  I6I49_RS06000 (I6I49_05995) pilO 803894..804631 (-) 738 WP_130235305.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6I49_RS06005 (I6I49_06000) pilN 804628..805284 (-) 657 WP_005401354.1 PilN domain-containing protein Machinery gene
  I6I49_RS06010 (I6I49_06005) - 805284..806341 (-) 1058 Protein_815 pilus assembly protein PilM -
  I6I49_RS06015 (I6I49_06010) ponA 806508..809036 (+) 2529 WP_201952683.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27664.16 Da        Isoelectric Point: 5.0201

>NTDB_id=527969 I6I49_RS06000 WP_130235305.1 803894..804631(-) (pilO) [Acinetobacter johnsonii strain FDAARGOS_1092]
MSRDEFEELTSENHAVTKKKMTVDKFFQQFNTLDPNNYGSWPFSVKLTCWIFIILVIGALGYFVVIKPKLDAISNAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVSGVNSGLKFKNIRLEPEIRQEFFIEQP
ISIEATGDYHSFGSFVSGIAALPRIVTLHDFDISASSNNEKKTDIPQISYSVKAKTYRYVGATATTDVDVKDAKNDTKAD
AGGAK

Nucleotide


Download         Length: 738 bp        

>NTDB_id=527969 I6I49_RS06000 WP_130235305.1 803894..804631(-) (pilO) [Acinetobacter johnsonii strain FDAARGOS_1092]
ATGAGTCGCGATGAATTTGAAGAATTAACATCAGAAAACCATGCTGTAACCAAGAAAAAAATGACGGTTGATAAGTTTTT
TCAACAGTTCAATACTTTGGATCCCAATAATTACGGTAGTTGGCCCTTTTCAGTCAAATTGACTTGTTGGATCTTTATCA
TTTTAGTGATTGGGGCATTGGGTTATTTTGTCGTGATTAAGCCGAAGCTTGATGCGATTTCAAATGCACATGCACAAGAA
CAAAATTTACTGAATGAGTTTCGTGAAAAAGATTCAAAATTACGTAACTTGCAGCAATATCAAGCGCAATTACAAGAAAT
GGAAGCGAATTTCAATCAGCAGTTAGAACAGTTGCCGAAAGAAACCGAGATTCCAGGTTTGGTTGAAGATATCAACGTGA
GCGGCGTAAATTCTGGATTAAAGTTTAAAAATATTCGTTTAGAGCCAGAAATTCGCCAAGAGTTCTTTATCGAACAGCCG
ATTTCGATTGAAGCCACGGGTGATTATCATTCTTTTGGTTCATTTGTCAGTGGGATTGCAGCTTTGCCGCGTATTGTGAC
CTTGCATGACTTCGATATCTCAGCATCAAGTAACAATGAGAAAAAGACGGATATTCCGCAAATTTCATACAGTGTAAAAG
CAAAAACCTACCGTTATGTCGGGGCGACGGCTACCACAGATGTTGATGTGAAAGATGCAAAGAATGATACGAAAGCCGAT
GCAGGAGGTGCCAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

74.009

92.653

0.686
  comO Acinetobacter baylyi ADP1

67.623

99.592

0.673